chr1.CM0113.560.nc (Lotus japonicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 chr1.CM0113.560.nc T335174_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.675 0.855
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0113.560.nc Sox 44 113

Links

Other Sox family TFs
Other Lotus japonicus TFs

280 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.684
PK29786.1 Cannabis sativa PK29786.1 I 0.676
Cla023817 Citrullus lanatus Cla023817 I 0.676
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.676
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.676
HMG-1 Pisum sativum Q41026_PEA D 0.675
PK11149.1 Cannabis sativa PK11149.1 I 0.666
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.665
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.665
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.665
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.665
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.665
Bra037266 Brassica rapa Bra037266 I 0.664
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.664
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.661
HMGB2 Arabidopsis thaliana AT1G20693 I 0.661
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.661
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.661
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.661
HMGB4 Arabidopsis thaliana AT2G17560 I 0.654
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.645
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.645
TCM_021706 Theobroma cacao TCM_021706 I 0.644
Bo5g030580 Brassica oleracea Bo5g030580 I 0.643
Ca_04825 Cicer arietinum Ca_04825 I 0.642
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.641
Pm002934 Prunus mume Pm002934 I 0.641
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.640
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.640
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.640
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.640
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.640
HMGB1 Arabidopsis thaliana AT3G51880 I 0.640
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.640
Bra017723 Brassica rapa Bra017723 I 0.637
Bra011624 Brassica rapa Bra011624 I 0.637
Bo1g006360 Brassica oleracea Bo1g006360 I 0.637
Bo7g117500 Brassica oleracea Bo7g117500 I 0.637
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.636
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.636
29669.m000844 Ricinus communis 29669.m000844 I 0.636
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.636
Bo7g101270 Brassica oleracea Bo7g101270 I 0.635
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.631
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.631
Bra002073 Brassica rapa Bra002073 I 0.630
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.627
Bo8g081200 Brassica oleracea Bo8g081200 I 0.627
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.625
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.623
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.623
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.623
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.623
Bo7g061420 Brassica oleracea Bo7g061420 I 0.623
Bo8g070350 Brassica oleracea Bo8g070350 I 0.623
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.623
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.620
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.620
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.620
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.620
HMGB3 Arabidopsis thaliana AT1G20696 I 0.620
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.620
mgf016363m Mimulus guttatus mgf016363m I 0.616
Bra025838 Brassica rapa Bra025838 I 0.616
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.613
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.611
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.611
Bo7g014280 Brassica oleracea Bo7g014280 I 0.610
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.610
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.610
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.609
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.609
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.609
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.609
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.608
MDP0000607529 Malus domestica MDP0000607529 I 0.608
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.608
Ca_19340 Cicer arietinum Ca_19340 I 0.607
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.607
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.607
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.607
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.604
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.602
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.602
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.602
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.602
Pm018913 Prunus mume Pm018913 I 0.602
MDP0000362980 Malus domestica MDP0000362980 I 0.602
MDP0000757111 Malus domestica MDP0000757111 I 0.602
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.602
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.601
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.601
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.601
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.599
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.598
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.596
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.596
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.595
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.595
TCM_034406 Theobroma cacao TCM_034406 I 0.594
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.594
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.594
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.594
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.593
OB06G35870 Oryza brachyantha OB06G35870 I 0.593
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.593
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.593
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.592
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.592
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.592
Pm026798 Prunus mume Pm026798 I 0.590
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.589
30170.m014386 Ricinus communis 30170.m014386 I 0.589
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.589
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.589
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.589
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.588
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.587
mgf009330m Mimulus guttatus mgf009330m I 0.587
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.587
Ca_10725 Cicer arietinum Ca_10725 I 0.587
F775_27510 Aegilops tauschii F775_27510 I 0.587
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.586
OBART06G28090 Oryza barthii OBART06G28090 I 0.586
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.586
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.586
OS06G0728000 Oryza sativa OS06G0728000 I 0.586
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.586
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.586
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.586
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.586
Si007288m.g Setaria italica Si007288m.g I 0.586
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.586
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.586
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.586
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.586
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.583
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.583
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.580
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.580
Cla018386 Citrullus lanatus Cla018386 I 0.580
TCM_000068 Theobroma cacao TCM_000068 I 0.580
29701.m000600 Ricinus communis 29701.m000600 I 0.579
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.579
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.578
Cla009093 Citrullus lanatus Cla009093 I 0.577
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.577
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.577
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.576
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.576
mgf008076m Mimulus guttatus mgf008076m I 0.575
Ca_05351 Cicer arietinum Ca_05351 I 0.575
mgf016608m Mimulus guttatus mgf016608m I 0.575
mgf006113m Mimulus guttatus mgf006113m I 0.575
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.574
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.573
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.573
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.573
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.573
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.572
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.572
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.572
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.572
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.571
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.568
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.567
mgf014518m Mimulus guttatus mgf014518m I 0.567
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.566
Ca_09896 Cicer arietinum Ca_09896 I 0.566
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.565
Si031512m.g Setaria italica Si031512m.g I 0.564
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.564
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.564
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.564
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.564
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.562
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.562
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.559
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.558
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.554
OB09G25530 Oryza brachyantha OB09G25530 I 0.554
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.554
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.554
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.554
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.552
MDP0000275042 Malus domestica MDP0000275042 I 0.550
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.548
OS09G0551600 Oryza sativa OS09G0551600 I 0.548
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.548
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.548
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.548
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.547
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.545
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.544
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.544
HMGB5 Arabidopsis thaliana AT4G35570 I 0.544
TCM_042534 Theobroma cacao TCM_042534 I 0.540
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.538
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.530
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.530
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.530
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.528
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.525
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.524
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.524
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.516
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.516
29600.m000548 Ricinus communis 29600.m000548 I 0.514
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.513
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.513
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.513
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.512
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.511
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.507
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.507
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.507
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.507
F775_30706 Aegilops tauschii F775_30706 I 0.507
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.501
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.499
mgf000913m Mimulus guttatus mgf000913m I 0.498
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.496
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.496
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.496
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.496
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.490
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.484
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.483
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.474
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.472
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.468
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.461
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.459
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.456
TP03_0469 Theileria parva TP03_0469 I 0.451
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.450
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.450
EuGene.1300010342 Micromonas sp RCC299 EuGene.1300010342 I 0.447
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.446
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.446
TA04735 Theileria annulata TA04735 I 0.446
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.442
PK14705.1 Cannabis sativa PK14705.1 I 0.442
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.442
PV09_01265 Verruconis gallopava PV09_01265 I 0.442
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.442
TCM_007659 Theobroma cacao TCM_007659 I 0.441
OB02G34710 Oryza brachyantha OB02G34710 N 0.437
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.437
MPH_02795 Macrophomina phaseolina MPH_02795 I 0.437
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.437
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.437
UCRNP2_2405 Neofusicoccum parvum UCRNP2_2405 I 0.437
OBART02G27340 Oryza barthii OBART02G27340 N 0.437
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.437
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.437
OS02G0670400 Oryza sativa OS02G0670400 N 0.437
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.437
fgenesh1_pg.C_chr_2000123 Mycosphaerella graminicola fgenesh1_pg.C_chr_2000123 I 0.434
Mycgr3G90433 Zymoseptoria tritici Mycgr3G90433 I 0.434
Cla009222 Citrullus lanatus Cla009222 I 0.434
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.434
SEPMUDRAFT_150255 Sphaerulina musiva SEPMUDRAFT_150255 I 0.431
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.429
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.429
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.427
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.427
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.425
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.425
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.425
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.425
Si018635m.g Setaria italica Si018635m.g N 0.422
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I 0.419
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I 0.419
TBLA_0I02240 Tetrapisispora blattae TBLA_0I02240 I 0.419
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I 0.419
MDP0000828844 Malus domestica MDP0000828844 I 0.418
MDP0000301546 Malus domestica MDP0000301546 I 0.418
NDAI_0A05290 Naumovozyma dairenensis NDAI_0A05290 I 0.416
MDP0000310093 Malus domestica MDP0000310093 I 0.415