CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PDK_20s1434871g001
(
Phoenix dactylifera
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
PDK_20s1434871g001
T335303_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.520
0.635
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1434871g001
Sox
123
187
LFGLDFRRQFRKQFKEKNPNNKLVSVVGKAGGDKWKSLSEAEKAPYVAKANKYKTEYTKNMAAYN
Links
Other
Sox
family TFs
Other
Phoenix dactylifera
TFs
228 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PDK_20s1781681g001
Phoenix dactylifera
PDK_20s1781681g001
N
0.564
Traes_7AL_364A6E96F
Triticum aestivum
Traes_7AL_364A6E96F
N
0.558
Traes_7DL_0CEFCB39D
Triticum aestivum
Traes_7DL_0CEFCB39D
N
0.558
Traes_7BL_F45C15FA2
Triticum aestivum
Traes_7BL_F45C15FA2
N
0.558
GSMUA_Achr2G03630_001
Musa acuminata
GSMUA_Achr2G03630_001
I
0.549
GSMUA_Achr11G07320_001
Musa acuminata
GSMUA_Achr11G07320_001
I
0.549
GSMUA_Achr9G21200_001
Musa acuminata
GSMUA_Achr9G21200_001
I
0.549
GSMUA_AchrUn_randomG22010_001
Musa acuminata
GSMUA_AchrUn_randomG22010_001
I
0.549
BRADI1G29730
Brachypodium distachyon
BRADI1G29730
I
0.546
OB06G35870
Oryza brachyantha
OB06G35870
I
0.546
GRMZM5G834758
Zea mays
GRMZM5G834758
I
0.546
Sb10g030910
Sorghum bicolor
Sb10g030910
I
0.546
TRIUR3_13577
Triticum urartu
TRIUR3_13577
I
0.540
MLOC_78556
Hordeum vulgare
MLOC_78556
I
0.540
F775_27510
Aegilops tauschii
F775_27510
I
0.540
OBART06G28090
Oryza barthii
OBART06G28090
I
0.539
ORGLA06G0238300
Oryza glaberrima
ORGLA06G0238300
I
0.539
LPERR06G23570
Leersia perrieri
LPERR06G23570
I
0.539
OLONG_007465
Oryza longistaminata
OLONG_007465
I
0.539
OMERI06G28030
Oryza meridionalis
OMERI06G28030
I
0.539
ONIVA06G31070
Oryza nivara
ONIVA06G31070
I
0.539
OGLUM06G29480
Oryza glumaepatula
OGLUM06G29480
I
0.539
OPUNC06G25640
Oryza punctata
OPUNC06G25640
I
0.539
ORUFI06G30030
Oryza rufipogon
ORUFI06G30030
I
0.539
OS06G0728000
Oryza sativa
OS06G0728000
I
0.539
Si007288m.g
Setaria italica
Si007288m.g
I
0.539
Pavir.Db00040
Panicum virgatum
Pavir.Db00040
I
0.539
Pavir.J04920
Panicum virgatum
Pavir.J04920
I
0.539
chr5.CM0180.220.nd
Lotus japonicus
chr5.CM0180.220.nd
I
0.534
MTR_5g024180
Medicago truncatula
MTR_5g024180
I
0.534
PGSC0003DMG400008501
Solanum tuberosum
PGSC0003DMG400008501
I
0.526
Eucgr.A00506
Eucalyptus grandis
Eucgr.A00506
I
0.526
MTR_3g115580
Medicago truncatula
MTR_3g115580
I
0.526
HMGB1
Vitis vinifera
VIT_08s0007g02200
I
0.526
GSMUA_Achr10G07270_001
Musa acuminata
GSMUA_Achr10G07270_001
I
0.521
HMG-1
Pisum sativum
Q41026_PEA
D
0.520
Thhalv10010751m.g
Eutrema salsugineum
Thhalv10010751m.g
I
0.520
HMGB1
Arabidopsis thaliana
AT3G51880
I
0.520
mgf016363m
Mimulus guttatus
mgf016363m
I
0.520
HMGB1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001281
I
0.520
Gorai.002G263800
Gossypium raimondii
Gorai.002G263800
I
0.520
MTR_7g068280
Medicago truncatula
MTR_7g068280
I
0.520
Cagra.1043s0022
Capsella grandiflora
Cagra.1043s0022
I
0.520
Bo7g101270
Brassica oleracea
Bo7g101270
I
0.520
Bostr.6864s0060
Boechera stricta
Bostr.6864s0060
I
0.520
PRUPE_ppa007518mg
Prunus persica
PRUPE_ppa007518mg
I
0.516
Pm002934
Prunus mume
Pm002934
I
0.516
evm.TU.supercontig_11.167
Carica papaya
evm.TU.supercontig_11.167
I
0.514
cassava24859.valid.m1
Manihot esculenta
cassava24859.valid.m1
I
0.512
Gorai.006G181900
Gossypium raimondii
Gorai.006G181900
I
0.512
TCM_042534
Theobroma cacao
TCM_042534
I
0.511
Ca_19340
Cicer arietinum
Ca_19340
I
0.510
Bo7g014280
Brassica oleracea
Bo7g014280
I
0.510
LjT35D08.150.nd
Lotus japonicus
LjT35D08.150.nd
I
0.510
AMTR_s00044p00160130
Amborella trichopoda
AMTR_s00044p00160130
I
0.509
Carubv10018109m.g
Capsella rubella
Carubv10018109m.g
I
0.508
Bo8g081200
Brassica oleracea
Bo8g081200
I
0.508
MTR_1g115220
Medicago truncatula
MTR_1g115220
I
0.507
Cucsa.272190
Cucumis sativus
Cucsa.272190
I
0.503
Cagra.6160s0028
Capsella grandiflora
Cagra.6160s0028
I
0.503
HMGB2
Arabidopsis lyrata
fgenesh2_kg.1__2255__AT1G20693.2
I
0.503
HMGB2
Arabidopsis thaliana
AT1G20693
I
0.503
Bostr.7128s0663
Boechera stricta
Bostr.7128s0663
I
0.503
Carubv10010586m.g
Capsella rubella
Carubv10010586m.g
I
0.503
Cla023817
Citrullus lanatus
Cla023817
I
0.503
Bra002073
Brassica rapa
Bra002073
I
0.502
POPTR_0005s10440
Populus trichocarpa
POPTR_0005s10440
I
0.501
SapurV1A.0085s0030
Salix purpurea
SapurV1A.0085s0030
I
0.501
gw1.106.60.1
Physcomitrella patens
gw1.106.60.1
I
0.501
gene20487-v1.0-hybrid
Fragaria vesca
gene20487-v1.0-hybrid
I
0.501
gw1.106.59.1
Physcomitrella patens
gw1.106.59.1
I
0.501
estExt_fgenesh1_pm.C_880025
Physcomitrella patens
estExt_fgenesh1_pm.C_880025
I
0.501
MDP0000242568
Malus domestica
MDP0000242568
I
0.496
PK29786.1
Cannabis sativa
PK29786.1
I
0.496
Ca_05351
Cicer arietinum
Ca_05351
I
0.494
MTR_7g082820
Medicago truncatula
MTR_7g082820
I
0.493
TCM_021706
Theobroma cacao
TCM_021706
I
0.493
Ciclev10012868m.g
Citrus clementina
Ciclev10012868m.g
I
0.492
orange1.1g030283m.g
Citrus sinensis
orange1.1g030283m.g
I
0.492
PK11149.1
Cannabis sativa
PK11149.1
I
0.492
VIT_18s0122g01190
Vitis vinifera
VIT_18s0122g01190
I
0.490
SapurV1A.0061s0170
Salix purpurea
SapurV1A.0061s0170
I
0.488
BRADI4G37247
Brachypodium distachyon
BRADI4G37247
I
0.488
VIT_04s0044g00110
Vitis vinifera
VIT_04s0044g00110
I
0.488
LPERR09G14820
Leersia perrieri
LPERR09G14820
I
0.488
SapurV1A.2780s0020
Salix purpurea
SapurV1A.2780s0020
I
0.488
HMGB3
Arabidopsis thaliana
AT1G20696
I
0.488
Gorai.002G115100
Gossypium raimondii
Gorai.002G115100
I
0.488
Ca_10725
Cicer arietinum
Ca_10725
I
0.488
OB09G25530
Oryza brachyantha
OB09G25530
I
0.488
orange1.1g031906m.g
Citrus sinensis
orange1.1g031906m.g
I
0.486
Bra037266
Brassica rapa
Bra037266
I
0.485
Thhalv10022905m.g
Eutrema salsugineum
Thhalv10022905m.g
I
0.485
Bostr.18351s0219
Boechera stricta
Bostr.18351s0219
I
0.484
Bo1g006360
Brassica oleracea
Bo1g006360
I
0.484
Bra017723
Brassica rapa
Bra017723
I
0.484
Cagra.1891s0017
Capsella grandiflora
Cagra.1891s0017
I
0.484
Bra011624
Brassica rapa
Bra011624
I
0.484
Carubv10014808m.g
Capsella rubella
Carubv10014808m.g
I
0.484
Bo7g117500
Brassica oleracea
Bo7g117500
I
0.484
HMGB4
Arabidopsis lyrata
fgenesh2_kg.3__3350__AT2G17560.1
I
0.484
VIT_13s0067g00640
Vitis vinifera
VIT_13s0067g00640
I
0.483
PDK_20s1306741g001
Phoenix dactylifera
PDK_20s1306741g001
I
0.483
Cla018386
Citrullus lanatus
Cla018386
I
0.483
GLYMA01G28820
Glycine max
GLYMA01G28820
I
0.483
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.483
Aquca_045_00054
Aquilegia coerulea
Aquca_045_00054
I
0.483
ORUFI09G20440
Oryza rufipogon
ORUFI09G20440
I
0.482
29701.m000600
Ricinus communis
29701.m000600
I
0.482
Cucsa.067200
Cucumis sativus
Cucsa.067200
I
0.482
OS09G0551600
Oryza sativa
OS09G0551600
I
0.482
OMERI09G14100
Oryza meridionalis
OMERI09G14100
I
0.482
ORGLA09G0150800
Oryza glaberrima
ORGLA09G0150800
I
0.482
ONIVA09G20030
Oryza nivara
ONIVA09G20030
I
0.482
Lus10035511.g
Linum usitatissimum
Lus10035511.g
I
0.481
PGSC0003DMG400001567
Solanum tuberosum
PGSC0003DMG400001567
I
0.480
Traes_5BL_9CC98DD38
Triticum aestivum
Traes_5BL_9CC98DD38
I
0.478
Solyc02g082700.2
Solanum lycopersicum
Solyc02g082700.2
I
0.478
Aquca_015_00344
Aquilegia coerulea
Aquca_015_00344
I
0.478
Traes_5DL_DD9491112
Triticum aestivum
Traes_5DL_DD9491112
I
0.478
MDP0000607529
Malus domestica
MDP0000607529
I
0.478
Eucgr.F03571
Eucalyptus grandis
Eucgr.F03571
I
0.478
TCM_000068
Theobroma cacao
TCM_000068
I
0.477
gene20961-v1.0-hybrid
Fragaria vesca
gene20961-v1.0-hybrid
I
0.477
MDP0000757111
Malus domestica
MDP0000757111
I
0.477
MDP0000362980
Malus domestica
MDP0000362980
I
0.477
PRUPE_ppa012424mg
Prunus persica
PRUPE_ppa012424mg
I
0.477
Pm018913
Prunus mume
Pm018913
I
0.477
HMGB4
Arabidopsis thaliana
AT2G17560
I
0.477
cassava42373.valid.m1
Manihot esculenta
cassava42373.valid.m1
I
0.475
cassava42371.valid.m1
Manihot esculenta
cassava42371.valid.m1
I
0.475
cassava44923.m1
Manihot esculenta
cassava44923.m1
I
0.475
Gorai.001G198900
Gossypium raimondii
Gorai.001G198900
I
0.475
cassava42372.valid.m1
Manihot esculenta
cassava42372.valid.m1
I
0.475
GLYMA10G43440
Glycine max
GLYMA10G43440
I
0.474
chr1.CM0113.560.nc
Lotus japonicus
chr1.CM0113.560.nc
I
0.474
GLYMA20G23370
Glycine max
GLYMA20G23370
I
0.474
Cucsa.323100
Cucumis sativus
Cucsa.323100
I
0.473
Cla009093
Citrullus lanatus
Cla009093
I
0.473
Eucgr.J02535
Eucalyptus grandis
Eucgr.J02535
I
0.472
Thhalv10026524m.g
Eutrema salsugineum
Thhalv10026524m.g
I
0.472
PGSC0003DMG400018685
Solanum tuberosum
PGSC0003DMG400018685
I
0.471
Lus10016025.g
Linum usitatissimum
Lus10016025.g
I
0.471
GLYMA06G01970
Glycine max
GLYMA06G01970
I
0.471
GLYMA04G01840
Glycine max
GLYMA04G01840
I
0.471
Lus10012252.g
Linum usitatissimum
Lus10012252.g
I
0.471
Bostr.7867s1415
Boechera stricta
Bostr.7867s1415
I
0.470
Bostr.7128s0662
Boechera stricta
Bostr.7128s0662
I
0.470
Gorai.005G114500
Gossypium raimondii
Gorai.005G114500
I
0.470
Thhalv10009371m.g
Eutrema salsugineum
Thhalv10009371m.g
I
0.470
gene13043-v1.0-hybrid
Fragaria vesca
gene13043-v1.0-hybrid
I
0.470
Bra025838
Brassica rapa
Bra025838
I
0.470
HMGB3
Arabidopsis lyrata
fgenesh2_kg.1__2258__AT1G20696.3
I
0.470
Cagra.6160s0027
Capsella grandiflora
Cagra.6160s0027
I
0.470
TCM_034406
Theobroma cacao
TCM_034406
I
0.470
Carubv10012681m.g
Capsella rubella
Carubv10012681m.g
I
0.470
HMGB5
Arabidopsis lyrata
Al_scaffold_0007_498
I
0.470
GRMZM2G162284
Zea mays
GRMZM2G162284
I
0.469
Si031512m.g
Setaria italica
Si031512m.g
I
0.469
Pavir.Ba01379
Panicum virgatum
Pavir.Ba01379
I
0.469
Sb02g032140
Sorghum bicolor
Sb02g032140
I
0.469
Pavir.Bb02550
Panicum virgatum
Pavir.Bb02550
I
0.469
Lus10028298.g
Linum usitatissimum
Lus10028298.g
I
0.468
SapurV1A.0016s0600
Salix purpurea
SapurV1A.0016s0600
I
0.467
PRUPE_ppa011596mg
Prunus persica
PRUPE_ppa011596mg
I
0.467
SapurV1A.0266s0310
Salix purpurea
SapurV1A.0266s0310
I
0.467
PRUPE_ppa012972mg
Prunus persica
PRUPE_ppa012972mg
I
0.467
Bo7g061420
Brassica oleracea
Bo7g061420
I
0.467
Ciclev10002782m.g
Citrus clementina
Ciclev10002782m.g
I
0.467
Bo8g070350
Brassica oleracea
Bo8g070350
I
0.467
POPTR_0002s01000
Populus trichocarpa
POPTR_0002s01000
I
0.467
XM_002306945.1
Populus trichocarpa
POPTR_0005s27390
I
0.467
Lus10040192.g
Linum usitatissimum
Lus10040192.g
I
0.465
Aquca_007_00897
Aquilegia coerulea
Aquca_007_00897
I
0.465
HMGB6
Vitis vinifera
VIT_10s0071g00870
I
0.463
mgf009330m
Mimulus guttatus
mgf009330m
I
0.462
Ca_04825
Cicer arietinum
Ca_04825
I
0.462
Solyc03g032130.2
Solanum lycopersicum
Solyc03g032130.2
N
0.462
gene18862-v1.0-hybrid
Fragaria vesca
gene18862-v1.0-hybrid
I
0.460
Carubv10005973m.g
Capsella rubella
Carubv10005973m.g
I
0.460
TRIUR3_27273
Triticum urartu
TRIUR3_27273
I
0.460
GRMZM2G066528
Zea mays
GRMZM2G066528
I
0.460
MDP0000275042
Malus domestica
MDP0000275042
I
0.460
Cagra.2350s0098
Capsella grandiflora
Cagra.2350s0098
I
0.460
Pm026798
Prunus mume
Pm026798
I
0.460
Ciclev10026715m.g
Citrus clementina
Ciclev10026715m.g
I
0.459
cassava35948.valid.m1
Manihot esculenta
cassava35948.valid.m1
I
0.458
cassava18625.valid.m1
Manihot esculenta
cassava18625.valid.m1
I
0.458
cassava18624.valid.m1
Manihot esculenta
cassava18624.valid.m1
I
0.458
cassava18626.valid.m1
Manihot esculenta
cassava18626.valid.m1
I
0.458
30170.m014386
Ricinus communis
30170.m014386
I
0.458
mgf014518m
Mimulus guttatus
mgf014518m
I
0.457
POPTR_0010s19720
Populus trichocarpa
POPTR_0010s19720
I
0.456
AMTR_s00029p00240750
Amborella trichopoda
AMTR_s00029p00240750
I
0.456
GLYMA09G33070
Glycine max
GLYMA09G33070
I
0.456
GLYMA16G22060
Glycine max
GLYMA16G22060
I
0.456
29600.m000548
Ricinus communis
29600.m000548
I
0.456
29669.m000844
Ricinus communis
29669.m000844
I
0.456
Gorai.013G018500
Gossypium raimondii
Gorai.013G018500
I
0.454
Thhalv10009970m.g
Eutrema salsugineum
Thhalv10009970m.g
I
0.453
evm.TU.supercontig_365.4
Carica papaya
evm.TU.supercontig_365.4
I
0.453
Aquca_004_00335
Aquilegia coerulea
Aquca_004_00335
I
0.452
mgf006113m
Mimulus guttatus
mgf006113m
I
0.451
mgf016608m
Mimulus guttatus
mgf016608m
I
0.451
mgf008076m
Mimulus guttatus
mgf008076m
I
0.451
SapurV1A.0825s0160
Salix purpurea
SapurV1A.0825s0160
I
0.450
orange1.1g029982m.g
Citrus sinensis
orange1.1g029982m.g
I
0.449
Ciclev10032930m.g
Citrus clementina
Ciclev10032930m.g
I
0.449
AMTR_s00109p00094550
Amborella trichopoda
AMTR_s00109p00094550
I
0.449
Ca_09896
Cicer arietinum
Ca_09896
I
0.448
orange1.1g031973m.g
Citrus sinensis
orange1.1g031973m.g
I
0.447
Bo5g030580
Brassica oleracea
Bo5g030580
I
0.443
BGIOSGA023639
Oryza indica
BGIOSGA023639
I
0.439
HMGB5
Arabidopsis thaliana
AT4G35570
I
0.438
Traes_5AL_D1358AF6E
Triticum aestivum
Traes_5AL_D1358AF6E
I
0.438
MTR_8g073345
Medicago truncatula
MTR_8g073345
I
0.437
Gorai.009G186800
Gossypium raimondii
Gorai.009G186800
I
0.436
evm.TU.supercontig_19.183
Carica papaya
evm.TU.supercontig_19.183
I
0.434
evm.TU.supercontig_26.174
Carica papaya
evm.TU.supercontig_26.174
I
0.432
OB01G34910
Oryza brachyantha
OB01G34910
I
0.427
EMIHUDRAFT_452808
Emiliania huxleyi
EMIHUDRAFT_452808
N
0.426
GSMUA_Achr4G25860_001
Musa acuminata
GSMUA_Achr4G25860_001
I
0.423
POPTR_0008s06730
Populus trichocarpa
POPTR_0008s06730
I
0.423
Traes_3DL_21C50DDF5
Triticum aestivum
Traes_3DL_21C50DDF5
N
0.420
TCM_007659
Theobroma cacao
TCM_007659
I
0.419
SELMODRAFT_18313
Selaginella moellendorffii
SELMODRAFT_18313
I
0.417
SELMODRAFT_18312
Selaginella moellendorffii
SELMODRAFT_18312
I
0.417
GSMUA_Achr2G11060_001
Musa acuminata
GSMUA_Achr2G11060_001
I
0.415