PDK_20s1709771g002 (Phoenix dactylifera)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PDK_20s1709771g002 T335306_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1709771g002 Sox 105 163

Links

Other Sox family TFs
Other Phoenix dactylifera TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.633
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.603
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.603
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.599
OS08G0101100 Oryza sativa OS08G0101100 I 0.596
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.596
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.596
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.596
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.596
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.596
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.596
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.596
OBART08G00070 Oryza barthii OBART08G00070 I 0.596
OB08G10120 Oryza brachyantha OB08G10120 N 0.577
Si014434m.g Setaria italica Si014434m.g N 0.571
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.553
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.553
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.552
MDP0000205665 Malus domestica MDP0000205665 I 0.552
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.551
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.548
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.541
Pm006054 Prunus mume Pm006054 I 0.541
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.537
TCM_042534 Theobroma cacao TCM_042534 I 0.537
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.533
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.531
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.531
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.531
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.531
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.527
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.523
OS04G0564600 Oryza sativa OS04G0564600 N 0.523
OBART04G21800 Oryza barthii OBART04G21800 N 0.523
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.523
OB04G28810 Oryza brachyantha OB04G28810 N 0.523
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.523
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.523
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.523
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.523
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.523
ENSMEUG00000004078 Macropus eugenii ENSMEUG00000004078 N 0.520
GUITHDRAFT_135067 Guillardia theta GUITHDRAFT_135067 N 0.519
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.514
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.509
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.507
PK14705.1 Cannabis sativa PK14705.1 I 0.494
TCM_007659 Theobroma cacao TCM_007659 I 0.494
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.493
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.484
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.482
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.480
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.479
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.478
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.477
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.474
PK03866.1 Cannabis sativa PK03866.1 I 0.474
Bra029371 Brassica rapa Bra029371 I 0.472
Bo2g160920 Brassica oleracea Bo2g160920 I 0.472
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.471
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.471
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.470
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.465
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.464
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.464
SapurV1A.0491s0160 Salix purpurea SapurV1A.0491s0160 N 0.460
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.459
Cla009222 Citrullus lanatus Cla009222 I 0.458
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.458
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.453
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.453
30131.m007272 Ricinus communis 30131.m007272 I 0.452
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.447
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.444
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.442
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.442
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.442
fgenesh2_pg.scaffold_4000274 Monosiga brevicollis fgenesh2_pg.scaffold_4000274 N 0.442
Hsal_03836--NA Harpegnathos saltator Hsal_03836--NA N 0.440
Traes_2DL_6CACFD720 Triticum aestivum Traes_2DL_6CACFD720 N 0.438
F775_06533 Aegilops tauschii F775_06533 N 0.438
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.437
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.437
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.435
Si007288m.g Setaria italica Si007288m.g I 0.430
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.429
ASIS014204 Anopheles sinensis ASIS014204 N 0.429
BTMF_0000420901 Brugia timori BTMF_0000420901 N 0.427
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.427
Traes_1DL_ED7FDC748 Triticum aestivum Traes_1DL_ED7FDC748 N 0.424
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.421
MLOC_6673 Hordeum vulgare MLOC_6673 N 0.421
EuGene.0000030607 Micromonas pusilla EuGene.0000030607 N 0.421
GPUH_0002275001 Gongylonema pulchrum GPUH_0002275001 N 0.420
CBN04053 Caenorhabditis brenneri CBN04053 N 0.420
TCNE_0000520101 Toxocara canis TCNE_0000520101 N 0.420
TCLT_0000071201 Thelazia callipaeda TCLT_0000071201 N 0.420
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N 0.420
LOAG_08062 Loa loa LOAG_08062 N 0.420
WUBG_06999 Wuchereria bancrofti WUBG_06999 N 0.420
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.419
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.419
SVUK_0001721701 Strongylus vulgaris SVUK_0001721701 N 0.419
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.419
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.419
ANCDUO_24269 Ancylostoma duodenale ANCDUO_24269 N 0.417
EMIHUDRAFT_245037 Emiliania huxleyi EMIHUDRAFT_245037 N 0.415