PDK_20s1781681g001 (Phoenix dactylifera)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PDK_20s1781681g001 T335309_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1781681g001 Sox 1 58

Links

Other Sox family TFs
Other Phoenix dactylifera TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N 0.711
Traes_7AL_364A6E96F Triticum aestivum Traes_7AL_364A6E96F N 0.711
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.682
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.621
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.619
MDP0000242568 Malus domestica MDP0000242568 I 0.601
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.564
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.537
MLOC_68913 Hordeum vulgare MLOC_68913 N 0.525
HMGB3 Arabidopsis thaliana AT1G20696 I 0.517
LCUP018488 Lucilia cuprina LCUP018488 N 0.511
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.495
Solyc03g032130.2 Solanum lycopersicum Solyc03g032130.2 N 0.491
Traes_5DL_BCFE39D13 Triticum aestivum Traes_5DL_BCFE39D13 N 0.491
GLYMA20G01570 Glycine max GLYMA20G01570 N 0.489
DILT_0001977801 Diphyllobothrium latum DILT_0001977801 N 0.487
TTAC_0000838901 Hydatigera taeniaeformis TTAC_0000838901 N 0.487
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.484
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.484
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.481
OB06G35870 Oryza brachyantha OB06G35870 I 0.481
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.481
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.481
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.479
D917_01243 Trichinella nativa D917_01243 N 0.478
D917_08464 Trichinella nativa D917_08464 N 0.478
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.475
F775_27510 Aegilops tauschii F775_27510 I 0.475
BGLB013830 Biomphalaria glabrata BGLB013830 N 0.475
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.475
OS06G0728000 Oryza sativa OS06G0728000 I 0.474
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.474
Si007288m.g Setaria italica Si007288m.g I 0.474
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.474
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.474
OBART06G28090 Oryza barthii OBART06G28090 I 0.474
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.474
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.474
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.474
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.474
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.474
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.474
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.474
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.474
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.474
MCINX003696 Melitaea cinxia MCINX003696 N 0.468
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.456
TRIUR3_17277 Triticum urartu TRIUR3_17277 N 0.454
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.451
OLONG_000335 Oryza longistaminata OLONG_000335 N 0.451
SVUK_0000827101 Strongylus vulgaris SVUK_0000827101 N 0.451
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.451
F775_32121 Aegilops tauschii F775_32121 N 0.446
GPLIN_000847800 Globodera pallida GPLIN_000847800 N 0.445
gene00778-v1.0-hybrid Fragaria vesca gene00778-v1.0-hybrid N 0.444
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.442
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.442
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.442
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.442
DICVIV_04699 Dictyocaulus viviparus DICVIV_04699 N 0.438
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.436
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.436
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.436
mgf016363m Mimulus guttatus mgf016363m I 0.435
Ca_19340 Cicer arietinum Ca_19340 I 0.435
Traes_5AL_D1358AF6E Triticum aestivum Traes_5AL_D1358AF6E I 0.435
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.434
HelroG167700 Helobdella robusta HelroG167700 N 0.434
Pm002934 Prunus mume Pm002934 I 0.432
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.432
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.430
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.428
EFA77534.1 Polysphondylium pallidum EFA77534.1 N 0.428
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.427
TCM_042534 Theobroma cacao TCM_042534 I 0.427
Ca_10725 Cicer arietinum Ca_10725 I 0.426
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.426
CTRG_00206 Candida tropicalis CTRG_00206 I 0.425
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.423
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.422
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.419
Cla023817 Citrullus lanatus Cla023817 I 0.419
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.418
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.418
Cla018386 Citrullus lanatus Cla018386 I 0.418
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.417
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.416