SAKL0F03872g (Lachancea kluyveri)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 SAKL0F03872g T335325_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN

NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.514 0.478
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS

SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.514 0.478
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN

NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.514 0.478
ROX1
M11346_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.514 0.478
ROX1
M11347_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.514 0.478
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW

AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.490 0.391
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD

HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.490 0.391
Sry
M00211_2.00
Mus musculus
ATTRTNNNNN

NNNNNAYAAT
PBM
Badis et al.(2009)
Sry_2833
0.437 0.348
Sry
M09408_2.00
Mus musculus
BWTTGTTWH

DWAACAAWV
Misc
Kulakovskiy et al.(2013)
SRY_MOUSE.H11MO.0.B
0.437 0.348
Sox15
M03973_2.00
Drosophila melanogaster
WYTGTTCGGTD

HACCGAACARW
SELEX
Nitta et al.(2015)
Sox15_1
0.426 0.261
Sox15
M03974_2.00
Drosophila melanogaster
VACAATDNCATTGTN

NACAATGNHATTGTB
SELEX
Nitta et al.(2015)
Sox15_2
0.426 0.261
Sox15
M06450_2.00
Drosophila melanogaster
RWACAATR

YATTGTWY
B1H
Zhu et al.(2011)
Sox15_SANGER_5_FBgn0005613
0.426 0.261
gei-3
M00711_2.00
Caenorhabditis elegans
NWNWMWDN

NHWKWNWN
PBM
Narasimhan et al.(2015)
pTH10038
0.425 0.304
Cic
M00195_2.00
Mus musculus
NNTGCTGABN

NVTCAGCANN
PBM
Badis et al.(2009)
Cic_3454
0.421 0.333
cic
M06452_2.00
Drosophila melanogaster
YYCATTSA

TSAATGRR
B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386
0.421 0.275
Sox14
M03971_2.00
Drosophila melanogaster
BTGTWCGGTR

YACCGWACAV
SELEX
Nitta et al.(2015)
Sox14_1
0.418 0.348
Sox14
M03972_2.00
Drosophila melanogaster
VACAATDNCATTGTB

VACAATGNHATTGTB
SELEX
Nitta et al.(2015)
Sox14_2
0.418 0.348
Sox14
M06449_2.00
Drosophila melanogaster
VYYCTTTGTYC

GRACAAAGRRB
B1H
Zhu et al.(2011)
Sox14_SANGER_10_FBgn0005612
0.418 0.348
Sox12
M00205_2.00
Mus musculus
HWTTGTBNNN

NNNVACAAWD
PBM
Badis et al.(2009)
Sox12_3957
0.418 0.333
SOX12
M05789_2.00
Homo sapiens
NATTGTTCGGK

MCCGAACAATN
SELEX
Yin et al.(2017)
SOX12_eDBD_HT-SELEX
0.418 0.333
SOX12
M05790_2.00
Homo sapiens
YATTGTTCBKT

AMVGAACAATR
SELEX
Yin et al.(2017)
SOX12_eDBD_Methyl-HT-SELEX
0.418 0.333
SOX2
M03519_2.00
Homo sapiens
DAACAATGKYAKTGTTN

NAACAMTRMCATTGTTH
SELEX
Jolma et al.(2013)
SOX2_1
0.415 0.304
SOX2
M03520_2.00
Homo sapiens
VTGAATGDYATTCAN

NTGAATRHCATTCAB
SELEX
Jolma et al.(2013)
SOX2_2
0.415 0.304
SOX2
M03521_2.00
Homo sapiens
NATCAATGNYATTGAWD

HWTCAATRNCATTGATN
SELEX
Jolma et al.(2013)
SOX2_3
0.415 0.304
SOX2
M03522_2.00
Homo sapiens
NAACAATANCATTGTTH

DAACAATGNTATTGTTN
SELEX
Jolma et al.(2013)
SOX2_4
0.415 0.304
SOX2
M03523_2.00
Homo sapiens
HATCAATANCATTGATH

DATCAATGNTATTGATD
SELEX
Jolma et al.(2013)
SOX2_5
0.415 0.304
SOX2
M03524_2.00
Homo sapiens
DTGAATWNCATTCAH

DTGAATGNWATTCAH
SELEX
Jolma et al.(2013)
SOX2_6
0.415 0.304
SOX2
M05897_2.00
Homo sapiens
NACAAWRRNN

NNYYWTTGTN
SMiLE-seq
Isakova et al.(2017)
SOX2
0.415 0.304
Sox2
M08170_2.00
Mus musculus
CCWTTGTB

VACAAWGG
ChIP-seq
Mathelier et al.(2014)
MA0143.3
0.415 0.304
Sox2
M08041_2.00
Mus musculus
WHWRMADNACAAWRR

YYWTTGTNHTKYWDW
ChIP-seq
Chen et al.(2011)
SRP000217_Sox2
0.415 0.304
Sox2
M08042_2.00
Mus musculus
TTWRCATNWSAAWRV

BYWTTSWNATGYWAA
ChIP-seq
Chen et al.(2011)
SRP000712_Sox2
0.415 0.304
SOX2
M09397_2.00
Homo sapiens
BBYYWTTGTBYBB

VVRVACAAWRRVV
Misc
Kulakovskiy et al.(2013)
SOX2_HUMAN.H11MO.0.A
0.415 0.304
Sox2
M09409_2.00
Mus musculus
THWRCATNACAAWRRV

BYYWTTGTNATGYWDA
Misc
Kulakovskiy et al.(2013)
SOX2_MOUSE.H11MO.0.A
0.415 0.304
SOX2
M11327_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q3_01
0.415 0.304
SOX2
M11328_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q3
0.415 0.304
SOX2
M11329_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q4
0.415 0.304
SOX2
M11330_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q6
0.415 0.304
Sox1
M00214_2.00
Mus musculus
NNNNNWBAAW

WTTVWNNNNN
PBM
Badis et al.(2009)
Sox1_2631
0.415 0.290
Sox1
M03542_2.00
Mus musculus
VACAATWNCATTGTT

AACAATGNWATTGTB
SELEX
Jolma et al.(2013)
Sox1_1
0.415 0.290
Sox1
M03543_2.00
Mus musculus
NTGAATWNCATTCAN

NTGAATGNWATTCAN
SELEX
Jolma et al.(2013)
Sox1_2
0.415 0.290
Sox1
M03544_2.00
Mus musculus
TCAATWNCATTGA

TCAATGNWATTGA
SELEX
Jolma et al.(2013)
Sox1_3
0.415 0.290
Sox1
M03545_2.00
Mus musculus
TGAATDDNHATTCA

TGAATDNHHATTCA
SELEX
Jolma et al.(2013)
Sox1_4
0.415 0.290
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SAKL0F03872g Sox 124 199

Links

Other Sox family TFs
Other Lachancea kluyveri TFs

851 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Alligator_sinensis_CCG018976.1 Alligator sinensis Alligator_sinensis_CCG018976.1 I 0.000
BAD93120.1_CONSTRUCT PBM CONSTRUCTS BAD93120.1_CONSTRUCT D 0.000
CapteG177878 Capitella teleta CapteG177878 I 0.000
CGI_10003574 Crassostrea gigas CGI_10003574 I 0.000
Cmyd_10001830 Chelonia mydas Cmyd_10001830 I 0.000
CXXC1 Homo sapiens ENSG00000154832 D 0.000
Cxxc1 Mus musculus ENSMUSG00000024560 I 0.000
CXXC1 Gorilla gorilla ENSGGOG00000016976 I 0.000
CXXC1 Otolemur garnettii ENSOGAG00000033715 I 0.000
CXXC1 Oryctolagus cuniculus ENSOCUG00000025756 I 0.000
cxxc1 Xenopus tropicalis XB-GENE-5910691 I 0.000
CXXC1 Microcebus murinus ENSMICG00000006424 I 0.000
CXXC1 Myotis lucifugus ENSMLUG00000025328 I 0.000
CXXC1 Macaca mulatta ENSMMUG00000009051 I 0.000
CXXC1 Monodelphis domestica ENSMODG00000010555 I 0.000
CXXC1 Ornithorhynchus anatinus ENSOANG00000014594 I 0.000
CXXC1 Felis catus ENSFCAG00000006135 I 0.000
CXXC1 Equus caballus ENSECAG00000017698 I 0.000
CXXC1 Anolis carolinensis ENSACAG00000006087 I 0.000
Cxxc1 Rattus norvegicus ENSRNOG00000014614 I 0.000
CXXC1 Pteropus vampyrus ENSPVAG00000015608 I 0.000
CXXC1 Sus scrofa ENSSSCG00000004517 I 0.000
CXXC1 Bos taurus ENSBTAG00000021884 I 0.000
CXXC1 Canis familiaris ENSCAFG00000018892 I 0.000
CXXC1 Pan troglodytes ENSPTRG00000010022 I 0.000
CXXC1 Cavia porcellus ENSCPOG00000020250 I 0.000
CXXC1 Tursiops truncatus ENSTTRG00000015535 I 0.000
CXXC1 Ochotona princeps ENSOPRG00000013787 I 0.000
CXXC1 Dasypus novemcinctus ENSDNOG00000032991 I 0.000
cxxc1.S Xenopus laevis XB-GENE-5910788 I 0.000
cxxc1a Tetraodon nigroviridis ENSTNIG00000001822 I 0.000
cxxc1a Takifugu rubripes ENSTRUG00000005220 I 0.000
cxxc1a Gasterosteus aculeatus ENSGACG00000001153 I 0.000
cxxc1a Danio rerio ENSDARG00000101996 I 0.000
cxxc1b Tetraodon nigroviridis ENSTNIG00000007325 I 0.000
cxxc1b Oryzias latipes ENSORLG00000014161 I 0.000
cxxc1b Takifugu rubripes ENSTRUG00000013293 I 0.000
cxxc1b Gasterosteus aculeatus ENSGACG00000012117 I 0.000
cxxc1b Danio rerio ENSDARG00000025718 I 0.000
ENSAMEG00000000259 Ailuropoda melanoleuca ENSAMEG00000000259 I 0.000
ENSAMXG00000006383 Astyanax mexicanus ENSAMXG00000006383 I 0.000
ENSAMXG00000016944 Astyanax mexicanus ENSAMXG00000016944 I 0.000
ENSAPLG00000005571 Anas platyrhynchos ENSAPLG00000005571 I 0.000
ENSCJAG00000005044 Callithrix jacchus ENSCJAG00000005044 I 0.000
ENSCJAG00000005472 Callithrix jacchus ENSCJAG00000005472 I 0.000
ENSCSAG00000018072 Chlorocebus sabaeus ENSCSAG00000018072 I 0.000
ENSGMOG00000002734 Gadus morhua ENSGMOG00000002734 I 0.000
ENSLACG00000001387 Latimeria chalumnae ENSLACG00000001387 I 0.000
ENSLOCG00000014684 Lepisosteus oculatus ENSLOCG00000014684 I 0.000
ENSMEUG00000001457 Macropus eugenii ENSMEUG00000001457 I 0.000
ENSMPUG00000008831 Mustela putorius furo ENSMPUG00000008831 I 0.000
ENSNLEG00000011746 Nomascus leucogenys ENSNLEG00000011746 I 0.000
ENSOARG00000004310 Ovis aries ENSOARG00000004310 I 0.000
ENSONIG00000000828 Oreochromis niloticus ENSONIG00000000828 I 0.000
ENSONIG00000020290 Oreochromis niloticus ENSONIG00000020290 I 0.000
ENSORLG00000019591 Oryzias latipes ENSORLG00000019591 I 0.000
ENSP00000390475 Macaca fascicularis ENSP00000390475 I 0.000
ENSP00000390475-D1 Bos grunniens ENSP00000390475-D1 I 0.000
ENSPANG00000009435 Papio anubis ENSPANG00000009435 I 0.000
ENSPFOG00000001601 Poecilia formosa ENSPFOG00000001601 I 0.000
ENSPFOG00000007618 Poecilia formosa ENSPFOG00000007618 I 0.000
ENSPSIG00000008595 Pelodiscus sinensis ENSPSIG00000008595 I 0.000
ENSSARG00000002011 Sorex araneus ENSSARG00000002011 I 0.000
ENSSHAG00000003967 Sarcophilus harrisii ENSSHAG00000003967 I 0.000
ENSSTOG00000029092 Ictidomys tridecemlineatus ENSSTOG00000029092 I 0.000
ENSXMAG00000005630 Xiphophorus maculatus ENSXMAG00000005630 I 0.000
ENSXMAG00000013043 Xiphophorus maculatus ENSXMAG00000013043 I 0.000
estExt_fgenesh2_pg.C_1650060 Branchiostoma floridae estExt_fgenesh2_pg.C_1650060 I 0.000
estExt_fgenesh2_pg.C_1650087 Branchiostoma floridae estExt_fgenesh2_pg.C_1650087 I 0.000
HelroG112476 Helobdella robusta HelroG112476 I 0.000
ISCW009422 Ixodes scapularis ISCW009422 N 0.000
LotgiG223348 Lottia gigantea LotgiG223348 I 0.000
Myotis_brandtii_CXXC1_10005914 Myotis brandtii Myotis_brandtii_CXXC1_10005914 I 0.000
Ocbimv22022574m.g Octopus bimaculoides Ocbimv22022574m.g I 0.000
Ogr11309 Ophisaurus gracilis Ogr11309 I 0.000
Pvit_00275 Pogona vitticeps Pvit_00275 I 0.000
Sakowv30043410m.g Saccoglossus kowalevskii Sakowv30043410m.g I 0.000
SMAR003348 Strigamia maritima SMAR003348 I 0.000
SPU_002500 Strongylocentrotus purpuratus SPU_002500 I 0.000
XP_002943289 Xenopus tropicalis XP_002943289 I 0.000