AATE006341 (Anopheles atroparvus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 AATE006341 T335432_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Bbx
M00196_2.00
Mus musculus
TTCATTGA

TCAATGAA
PBM
Badis et al.(2009)
Bbx_3753
0.431 0.406
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AATE006341-PA Sox 129 201

Links

Other Sox family TFs
Other Anopheles atroparvus TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.000
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.000
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.000
Ca_13295 Cicer arietinum Ca_13295 I 0.000
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.000
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.000
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.000
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.000
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.000
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.000
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.000
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.000
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.000
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.000
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.000
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.000
MDP0000669451 Malus domestica MDP0000669451 I 0.000
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.000
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.000
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.000
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.000
mgf008289m Mimulus guttatus mgf008289m N 0.000
mgf025772m Mimulus guttatus mgf025772m N 0.000
OBART03G31370 Oryza barthii OBART03G31370 N 0.000
OB03G38380 Oryza brachyantha OB03G38380 N 0.000
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N 0.000
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N 0.000
SLR1 Oryza indica BGIOSGA013420 N 0.000
OLONG_002563 Oryza longistaminata OLONG_002563 N 0.000
OMERI03G27970 Oryza meridionalis OMERI03G27970 N 0.000
ONIVA03G32670 Oryza nivara ONIVA03G32670 N 0.000
OPUNC03G28530 Oryza punctata OPUNC03G28530 N 0.000
SLR1 Oryza sativa OS03G0707600 N 0.000
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.000
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.000
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.000
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.000
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.000
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.000
Pm014329 Prunus mume Pm014329 I 0.000
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.000
29692.m000540 Ricinus communis 29692.m000540 N 0.000
28677.m000055 Ricinus communis 28677.m000055 N 0.000
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.000
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.000
Si039400m.g Setaria italica Si039400m.g N 0.000
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.000
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.000
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.000
Traes_4DS_ADBA6E30A Triticum aestivum Traes_4DS_ADBA6E30A N 0.000
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N 0.000
TRIUR3_18790 Triticum urartu TRIUR3_18790 N 0.000
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.000
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.000
GRMZM2G024973 Zea mays GRMZM2G024973 N 0.000
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.000