AFAF017335 (Anopheles farauti)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 AFAF017335 T335589_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Sox15
M03973_2.00
Drosophila melanogaster
WYTGTTCGGTD

HACCGAACARW
SELEX
Nitta et al.(2015)
Sox15_1
0.423 0.725
Sox15
M03974_2.00
Drosophila melanogaster
VACAATDNCATTGTN

NACAATGNHATTGTB
SELEX
Nitta et al.(2015)
Sox15_2
0.423 0.725
Sox15
M06450_2.00
Drosophila melanogaster
RWACAATR

YATTGTWY
B1H
Zhu et al.(2011)
Sox15_SANGER_5_FBgn0005613
0.423 0.725
Sox18
M00204_2.00
Mus musculus
NNNWBAAT

ATTVWNNN
PBM
Badis et al.(2009)
Sox18_3506
0.418 0.686
SOX18
M03529_2.00
Homo sapiens
AACAATDNCATTGTT

AACAATGNHATTGTT
SELEX
Jolma et al.(2013)
SOX18_1
0.418 0.686
SOX18
M03530_2.00
Homo sapiens
ATCAATWDCATTGAT

ATCAATGHWATTGAT
SELEX
Jolma et al.(2013)
SOX18_2
0.418 0.686
SOX18
M03531_2.00
Homo sapiens
ATGAATWYCATTCAT

ATGAATGRWATTCAT
SELEX
Jolma et al.(2013)
SOX18_3
0.418 0.686
SOX18
M05791_2.00
Homo sapiens
VACRAYGV

BCRTYGTB
SELEX
Yin et al.(2017)
SOX18_eDBD_HT-SELEX
0.418 0.686
SOX18
M11334_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5_01
0.418 0.686
SOX18
M11335_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5
0.418 0.686
SOX18
M05792_2.00
Homo sapiens
BYATTGTN

NACAATRV
SELEX
Yin et al.(2017)
SOX18_eDBD_Methyl-HT-SELEX
0.418 0.686
Sox17
M00199_2.00
Mus musculus
NNNNWSAAT

ATTSWNNNN
PBM
Badis et al.(2009)
Sox17_2837
0.418 0.667
Sox17
M03533_2.00
Mus musculus
AACAATWDCATTGTT

AACAATGHWATTGTT
SELEX
Jolma et al.(2013)
Sox17_1
0.418 0.667
Sox17
M03534_2.00
Mus musculus
ATGAATWNCATTCAT

ATGAATGNWATTCAT
SELEX
Jolma et al.(2013)
Sox17_2
0.418 0.667
SOX17
M05896_2.00
Homo sapiens
DRACAATRVN

NBYATTGTYH
SMiLE-seq
Isakova et al.(2017)
SOX17
0.418 0.667
Sox17
M02718_2.00
Mus musculus
SACAATRNN

NNYATTGTS
SELEX
Mathelier et al.(2014)
MA0078.1
0.418 0.667
Sox17
M08040_2.00
Mus musculus
RVACAAWRRVN

NBYYWTTGTBY
ChIP-seq
Chen et al.(2011)
GSE19026_Sox17_XENcells
0.418 0.667
SOX17
M09396_2.00
Homo sapiens
BCCATTKTNBN

NVNAMAATGGV
Misc
Kulakovskiy et al.(2013)
SOX17_HUMAN.H11MO.0.C
0.418 0.667
SOX17
M11323_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX17_01
0.418 0.667
SOX17
M11324_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX17_Q2
0.418 0.667
Sox7
M00209_2.00
Mus musculus
NNNWBAAT

ATTVWNNN
PBM
Badis et al.(2009)
Sox7_3460
0.418 0.647
SOX7
M03516_2.00
Homo sapiens
AACAATRDNHAKTGTT

AACAMTDNHYATTGTT
SELEX
Jolma et al.(2013)
SOX7_1
0.418 0.647
SOX7
M03517_2.00
Homo sapiens
DAACAATKDYAKTGTTN

NAACAMTRHMATTGTTH
SELEX
Jolma et al.(2013)
SOX7_2
0.418 0.647
SOX7
M03518_2.00
Homo sapiens
NATGAATKDCAKTCATN

NATGAMTGHMATTCATN
SELEX
Jolma et al.(2013)
SOX7_3
0.418 0.647
SOX7
M05787_2.00
Homo sapiens
ACAATDNHATTGT

ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_HT-SELEX
0.418 0.647
SOX7
M11325_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX7_Q2
0.418 0.647
SOX7
M05788_2.00
Homo sapiens
ACAATDNHATTGT

ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_Methyl-HT-SELEX
0.418 0.647
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AFAF017335-PA Sox 135 185

Links

Other Sox family TFs
Other Anopheles farauti TFs

Invalid Input OrderBy

326 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action