CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BGLB002734
(
Biomphalaria glabrata
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
BGLB002734
T335814_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sox15
M03973_2.00
Drosophila melanogaster
WYTGTTCGGTD
HACCGAACARW
SELEX
Nitta et al.(2015)
Sox15_1
0.417
0.789
Sox15
M03974_2.00
Drosophila melanogaster
VACAATDNCATTGTN
NACAATGNHATTGTB
SELEX
Nitta et al.(2015)
Sox15_2
0.417
0.789
Sox15
M06450_2.00
Drosophila melanogaster
RWACAATR
YATTGTWY
B1H
Zhu et al.(2011)
Sox15_SANGER_5_FBgn0005613
0.417
0.789
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGLB002734-PA
Sox
44
81
IRRPMNAFMVWAKVERKRLAGENPDIHNAELSKILGES
Links
Other
Sox
family TFs
Other
Biomphalaria glabrata
TFs
208 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy