CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2
(
Meloidogyne floridensis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2
T336076_2.00
WormBase:ParaSite (2015-Oct-22)
NCBI Gene Info:
This gene encodes a member of the Smad family of signal transduction proteins. Smad proteins are phosphorylated and activated by transmembrane serine-threonine receptor kinases in response to transforming growth factor (TGF)-beta signaling. The product of this gene forms homomeric complexes and heteromeric complexes with other activated Smad proteins, which then accumulate in the nucleus and regulate the transcription of target genes. This protein binds to DNA and recognizes an 8-bp palindromic sequence (GTCTAGAC) called the Smad-binding element (SBE). The protein acts as a tumor suppressor and inhibits epithelial cell proliferation. It may also have an inhibitory effect on tumors by reducing angiogenesis and increasing blood vessel hyperpermeability. The encoded protein is a crucial component of the bone morphogenetic protein signaling pathway. The Smad proteins are subject to complex regulation by post-translational modifications. Mutations or deletions in this gene have been shown to result in pancreatic cancer, juvenile polyposis syndrome, and hereditary hemorrhagic telangiectasia syndrome. [provided by RefSeq, May 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2-mRNA-1
Sox
62
130
GKTSPYGFFVKMCYEEHKKKYPNECVQVTEISKKCSQKWKTMTDEEKKRFFELAQKDAERYQAEVAAYG
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2-mRNA-1
Sox
148
216
PKRALSAFFFFSNDKRQEVSGEHPEWKVGQIAQELGLRWKALSDDERIIFEKKAQEDKERYAEEMKAYR
Links
Other
Sox
family TFs
Other
Meloidogyne floridensis
TFs
155 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
genemark-nMf.1.1.scaf06964-processed-gene-0.3
Meloidogyne floridensis
genemark-nMf.1.1.scaf06964-processed-gene-0.3
N
0.741
L893_g5947
Steinernema glaseri
L893_g5947
N
0.660
SMUV_0000232601
Syphacia muris
SMUV_0000232601
N
0.660
L892_g17551
Steinernema scapterisci
L892_g17551
N
0.660
L596_g22130
Steinernema carpocapsae
L596_g22130
N
0.660
ASU_03902
Ascaris suum
ASU_03902
N
0.657
PEQ_0000150901
Parascaris equorum
PEQ_0000150901
N
0.657
EVEC_0000577301
Enterobius vermicularis
EVEC_0000577301
N
0.657
TCLT_0000879501
Thelazia callipaeda
TCLT_0000879501
N
0.657
TCNE_0000567001
Toxocara canis
TCNE_0000567001
N
0.657
L889_g13533
Steinernema feltiae
L889_g13533
N
0.655
MhA1_Contig113.frz3.gene9
Meloidogyne hapla
MhA1_Contig113.frz3.gene9
N
0.655
PTRK_0000986200
Parastrongyloides trichosuri
PTRK_0000986200
N
0.653
SPAL_0001030300
Strongyloides papillosus
SPAL_0001030300
N
0.653
SSTP_0000371800
Strongyloides stercoralis
SSTP_0000371800
N
0.653
Bm4180
Brugia malayi
Bm4180
N
0.653
nAv.1.0.1.g02101
Acanthocheilonema viteae
nAv.1.0.1.g02101
N
0.653
EEL_0000068601
Elaeophora elaphi
EEL_0000068601
N
0.653
WBGene00245261
Onchocerca volvulus
WBGene00245261
N
0.653
LOAG_04936
Loa loa
LOAG_04936
N
0.653
SVE_0494300
Strongyloides venezuelensis
SVE_0494300
N
0.653
nDi.2.2.2.g04979
Dirofilaria immitis
nDi.2.2.2.g04979
N
0.653
Minc03268
Meloidogyne incognita
Minc03268
N
0.652
Minc08988
Meloidogyne incognita
Minc08988
N
0.652
DME_0001055201
Dracunculus medinensis
DME_0001055201
N
0.646
RSKR_0000605700
Rhabditophanes kr3021
RSKR_0000605700
N
0.640
ACOC_0000768601
Angiostrongylus costaricensis
ACOC_0000768601
N
0.638
HCOI00860100
Haemonchus contortus
HCOI00860100
N
0.638
NECAME_09126
Necator americanus
NECAME_09126
N
0.638
TELCIR_07111
Teladorsagia circumcincta
TELCIR_07111
N
0.638
NBR_0000911001
Nippostrongylus brasiliensis
NBR_0000911001
N
0.638
Hba_13817
Heterorhabditis bacteriophora
Hba_13817
N
0.635
WUBG_12099
Wuchereria bancrofti
WUBG_12099
N
0.632
ANCCAN_10156
Ancylostoma caninum
ANCCAN_10156
N
0.630
Ppa-hmg-1.2
Pristionchus pacificus
PPA02361
N
0.630
scaffold580-EXSNAP2012.5
Pristionchus exspectatus
scaffold580-EXSNAP2012.5
N
0.630
D918_07195
Trichuris suis
D918_07195
N
0.626
TTRE_0000338301
Trichuris trichiura
TTRE_0000338301
N
0.626
ASIM_0000048401
Anisakis simplex
ASIM_0000048401
N
0.625
SBAD_0000405201
Soboliphyme baturini
SBAD_0000405201
N
0.613
TMUE_s0235000800
Trichuris muris
TMUE_s0235000800
N
0.611
D917_08189
Trichinella nativa
D917_08189
N
0.611
CBN17977
Caenorhabditis brenneri
CBN17977
N
0.609
CJA09678
Caenorhabditis japonica
CJA09678
N
0.609
CBG17468
Caenorhabditis briggsae
CBG17468
N
0.609
hmg-1.2
Caenorhabditis elegans
WBGene00001972
N
0.605
Minc01077
Meloidogyne incognita
Minc01077
N
0.603
BXY_1555400
Bursaphelenchus xylophilus
BXY_1555400
N
0.589
nLs.2.1.2.g00300
Litomosoides sigmodontis
nLs.2.1.2.g00300
N
0.589
ANCCEY_10333
Ancylostoma ceylanicum
ANCCEY_10333
N
0.582
nRc.2.0.1.g43473
Romanomermis culicivorax
nRc.2.0.1.g43473
N
0.579
CJA42049
Caenorhabditis japonica
CJA42049
N
0.578
EFV53345
Trichinella spiralis
EFV53345
N
0.576
EFV57410
Trichinella spiralis
EFV57410
N
0.573
D917_01254
Trichinella nativa
D917_01254
N
0.573
ACAC_0001052301
Angiostrongylus cantonensis
ACAC_0001052301
N
0.568
CRE02943
Caenorhabditis remanei
CRE02943
N
0.564
GPUH_0001544201
Gongylonema pulchrum
GPUH_0001544201
N
0.549
TELCIR_06008
Teladorsagia circumcincta
TELCIR_06008
N
0.506
EmuJ_001049000
Echinococcus multilocularis
EmuJ_001049000
N
0.500
TsM_000115400
Taenia solium
TsM_000115400
N
0.500
MCOS_0000526101
Mesocestoides corti
MCOS_0000526101
N
0.497
fgenesh2_pm.scaffold_24000033
Branchiostoma floridae
fgenesh2_pm.scaffold_24000033
N
0.488
PXEA_0002175501
Protopolystoma xenopodis
PXEA_0002175501
N
0.485
SROB_0000153901
Schistosoma rodhaini
SROB_0000153901
N
0.483
Smp_000980
Schistosoma mansoni
Smp_000980
N
0.483
SMTD_0001194601
Schistosoma mattheei
SMTD_0001194601
N
0.483
SCUD_0000020101
Schistosoma curassoni
SCUD_0000020101
N
0.483
HNAJ_0001249801
Hymenolepis nana
HNAJ_0001249801
N
0.482
HmN_000466000
Hymenolepis microstoma
HmN_000466000
N
0.482
HDID_0000237901
Hymenolepis diminuta
HDID_0000237901
N
0.482
CGI_10023724
Crassostrea gigas
CGI_10023724
N
0.482
CapteG158220
Capitella teleta
CapteG158220
N
0.479
T265_12733
Opisthorchis viverrini
T265_12733
N
0.474
BXY_1714600
Bursaphelenchus xylophilus
BXY_1714600
N
0.474
HelroG157878
Helobdella robusta
HelroG157878
N
0.471
SMU15030256
Schmidtea mediterranea
SMU15030256
N
0.469
ECANG7_02036
Echinococcus canadensis
ECANG7_02036
N
0.463
TTAC_0000225801
Hydatigera taeniaeformis
TTAC_0000225801
N
0.463
ENSAMXG00000014031
Astyanax mexicanus
ENSAMXG00000014031
N
0.458
AAI68534
Xenopus tropicalis
AAI68534
N
0.457
D915_00818
Fasciola hepatica
D915_00818
N
0.456
PXEA_0000637001
Protopolystoma xenopodis
PXEA_0000637001
N
0.451
AMIN005344
Anopheles minimus
AMIN005344
N
0.448
ASIS000124
Anopheles sinensis
ASIS000124
N
0.448
AMEM017336
Anopheles merus
AMEM017336
N
0.448
AARA010318
Anopheles arabiensis
AARA010318
N
0.448
AALB006743
Anopheles albimanus
AALB006743
N
0.448
AGAP000005
Anopheles gambiae
AGAP000005
N
0.448
AMEC021909
Anopheles melas
AMEC021909
N
0.448
Sjc_0031360
Schistosoma japonicum
Sjc_0031360
N
0.448
ADAC001494
Anopheles darlingi
ADAC001494
N
0.448
AAEL011380
Aedes aegypti
AAEL011380
N
0.448
AATE018776
Anopheles atroparvus
AATE018776
N
0.448
ACUA021022
Anopheles culicifacies
ACUA021022
N
0.448
AFUN010134
Anopheles funestus
AFUN010134
N
0.448
AMAM015540
Anopheles maculatus
AMAM015540
N
0.448
ISCW017350
Ixodes scapularis
ISCW017350
N
0.448
AFAF003948
Anopheles farauti
AFAF003948
N
0.448
AEPI002924
Anopheles epiroticus
AEPI002924
N
0.448
ADIR011701
Anopheles dirus
ADIR011701
N
0.448
ENSPFOG00000008464
Poecilia formosa
ENSPFOG00000008464
N
0.446
SMAR013695
Strigamia maritima
SMAR013695
N
0.446
tetur02g08260
Tetranychus urticae
tetur02g08260
N
0.443
ENSOCUG00000021132
Oryctolagus cuniculus
ENSOCUG00000021132
N
0.440
tetur02g08340
Tetranychus urticae
tetur02g08340
N
0.439
Sakowv30042012m.g
Saccoglossus kowalevskii
Sakowv30042012m.g
N
0.439
hmg1/2
Ciona intestinalis
ENSCING00000004075
N
0.437
SSLN_0000493501
Schistocephalus solidus
SSLN_0000493501
N
0.436
DILT_0001497901
Diphyllobothrium latum
DILT_0001497901
N
0.436
hmgb2a
Danio rerio
ENSDARG00000029722
N
0.435
hmgb1a
Takifugu rubripes
ENSTRUG00000008452
N
0.434
CpipJ_CPIJ014043
Culex pipiens
CpipJ_CPIJ014043
N
0.434
CPIJ014043
Culex quinquefasciatus
CPIJ014043
N
0.434
RGD1561694
Rattus norvegicus
ENSRNOG00000029107
N
0.432
Cflo_05895--XP_001121384.1_APIME
Camponotus floridanus
Cflo_05895--XP_001121384.1_APIME
N
0.432
Hmgb2
Rattus norvegicus
ENSRNOG00000033321
N
0.432
Hsal_13110--XP_001121384.1_APIME
Harpegnathos saltator
Hsal_13110--XP_001121384.1_APIME
N
0.432
Hmgb2l1
Rattus norvegicus
ENSRNOG00000013167
N
0.432
HelroG87827
Helobdella robusta
HelroG87827
N
0.431
ENSCSAVG00000000341
Ciona savignyi
ENSCSAVG00000000341
N
0.430
YQE_03203
Dendroctonus ponderosae
YQE_03203
N
0.429
ACEP16613
Atta cephalotes
ACEP16613
N
0.428
SINV22586
Solenopsis invicta
SINV22586
N
0.428
NV15664
Nasonia vitripennis
NV15664
N
0.428
hmgb1b
Gasterosteus aculeatus
ENSGACG00000011447
N
0.426
ENSOARG00000015382
Ovis aries
ENSOARG00000015382
N
0.425
SSLN_0001302101
Schistocephalus solidus
SSLN_0001302101
N
0.425
ENSOARG00000015955
Ovis aries
ENSOARG00000015955
N
0.425
Myotis_brandtii_Hmgb2_10018437
Myotis brandtii
Myotis_brandtii_Hmgb2_10018437
N
0.425
ENSPANG00000007527
Papio anubis
ENSPANG00000007527
N
0.425
ENSOARG00000010383
Ovis aries
ENSOARG00000010383
N
0.425
DAPPUDRAFT_232871
Daphnia pulex
DAPPUDRAFT_232871
N
0.424
T265_10726
Opisthorchis viverrini
T265_10726
N
0.424
ACYPI007949
Acyrthosiphon pisum
ACYPI007949
N
0.422
PXEA_0000566701
Protopolystoma xenopodis
PXEA_0000566701
N
0.422
HelroG157726
Helobdella robusta
HelroG157726
N
0.421
Aqu1.227714
Amphimedon queenslandica
Aqu1.227714
N
0.421
GE17263
Drosophila yakuba
FBgn0234741
N
0.420
AQUA004962
Anopheles quadriannulatus
AQUA004962
N
0.420
GD17278
Drosophila simulans
FBgn0188840
N
0.420
GG17955
Drosophila erecta
FBgn0110175
N
0.420
Dsp1
Drosophila melanogaster
FBgn0011764
N
0.420
ENSOCUG00000004133
Oryctolagus cuniculus
ENSOCUG00000004133
N
0.420
GA11488
Drosophila pseudoobscura
FBgn0071539
N
0.420
GF19115
Drosophila ananassae
FBgn0096126
N
0.420
SMU15027649
Schmidtea mediterranea
SMU15027649
N
0.419
ENSFCAG00000028961
Felis catus
ENSFCAG00000028961
N
0.419
ENSAMXG00000014832
Astyanax mexicanus
ENSAMXG00000014832
N
0.418
GI10980
Drosophila mojavensis
FBgn0133743
N
0.416
LCUP007363
Lucilia cuprina
LCUP007363
N
0.416
GPLIN_000727200
Globodera pallida
GPLIN_000727200
N
0.416
GK25058
Drosophila willistoni
FBgn0227017
N
0.416
GJ19445
Drosophila virilis
FBgn0206588
N
0.416
GH12282
Drosophila grimshawi
FBgn0119761
N
0.416