CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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D917_05046
(
Trichinella nativa
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
D917_05046
T336168_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
D917_05046
Sox
1208
1273
TSRSKSGYILFSAVIRKRIMAENPECSFGHISKIVGAEWKKLSEEEKKKYEEEAQKIAEEREKADQ
Links
Other
Sox
family TFs
Other
Trichinella nativa
TFs
109 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
EFV56090
Trichinella spiralis
EFV56090
N
0.741
EFV56095
Trichinella spiralis
EFV56095
N
0.708
D918_06015
Trichuris suis
D918_06015
N
0.708
D917_05048
Trichinella nativa
D917_05048
N
0.708
TMUE_s0227000300
Trichuris muris
TMUE_s0227000300
N
0.701
TMUE_s0089001400
Trichuris muris
TMUE_s0089001400
N
0.623
D918_05288
Trichuris suis
D918_05288
N
0.623
BGLB013626
Biomphalaria glabrata
BGLB013626
N
0.535
L889_g13125
Steinernema feltiae
L889_g13125
N
0.533
MhA1_Contig232.frz3.gene23
Meloidogyne hapla
MhA1_Contig232.frz3.gene23
N
0.531
Minc06622
Meloidogyne incognita
Minc06622
N
0.531
ASIM_0001613301
Anisakis simplex
ASIM_0001613301
N
0.521
SMUV_0000135001
Syphacia muris
SMUV_0000135001
N
0.521
BTMF_0001478401
Brugia timori
BTMF_0001478401
N
0.519
L596_g21045
Steinernema carpocapsae
L596_g21045
I
0.516
L892_g13433
Steinernema scapterisci
L892_g13433
I
0.516
ASU_00939
Ascaris suum
ASU_00939
N
0.515
ISCW005293
Ixodes scapularis
ISCW005293
N
0.515
SMAR009325
Strigamia maritima
SMAR009325
N
0.512
LOAG_15875
Loa loa
LOAG_15875
N
0.511
nOo.2.0.1.g07918
Onchocerca ochengi
nOo.2.0.1.g07918
N
0.511
nDi.2.2.2.g10298
Dirofilaria immitis
nDi.2.2.2.g10298
N
0.511
nDi.2.2.2.g06671
Dirofilaria immitis
nDi.2.2.2.g06671
N
0.511
nLs.2.1.2.g08566
Litomosoides sigmodontis
nLs.2.1.2.g08566
N
0.511
GPUH_0001659301
Gongylonema pulchrum
GPUH_0001659301
N
0.511
Bm2393
Brugia malayi
Bm2393
N
0.511
WUBG_00348
Wuchereria bancrofti
WUBG_00348
N
0.511
WBGene00238178
Onchocerca volvulus
WBGene00238178
N
0.511
TCLT_0000189901
Thelazia callipaeda
TCLT_0000189901
N
0.506
scaffold517-EXSNAP2012.7
Pristionchus exspectatus
scaffold517-EXSNAP2012.7
N
0.504
CBG11867
Caenorhabditis briggsae
CBG11867
N
0.497
CJA30740
Caenorhabditis japonica
CJA30740
N
0.497
CJA03316
Caenorhabditis japonica
CJA03316
N
0.497
RSKR_0000607700
Rhabditophanes kr3021
RSKR_0000607700
N
0.497
SSTP_0000878000
Strongyloides stercoralis
SSTP_0000878000
N
0.490
PTRK_0001310900
Parastrongyloides trichosuri
PTRK_0001310900
N
0.483
SVE_0827400
Strongyloides venezuelensis
SVE_0827400
N
0.483
SPAL_0001274100
Strongyloides papillosus
SPAL_0001274100
N
0.483
CRE28315
Caenorhabditis remanei
CRE28315
N
0.482
CBN15844
Caenorhabditis brenneri
CBN15844
N
0.478
SPU_025140
Strongylocentrotus purpuratus
SPU_025140
N
0.471
pbrm-1
Caenorhabditis elegans
WBGene00007042
N
0.470
CBN07735
Caenorhabditis brenneri
CBN07735
N
0.470
CRE14258
Caenorhabditis remanei
CRE14258
N
0.470
CBN31697
Caenorhabditis brenneri
CBN31697
N
0.470
TELCIR_16246
Teladorsagia circumcincta
TELCIR_16246
N
0.468
SVUK_0000363901
Strongylus vulgaris
SVUK_0000363901
N
0.468
DICVIV_00270
Dictyocaulus viviparus
DICVIV_00270
N
0.468
ANCDUO_06783
Ancylostoma duodenale
ANCDUO_06783
N
0.468
HCOI01215700
Haemonchus contortus
HCOI01215700
N
0.468
HCOI00076900
Haemonchus contortus
HCOI00076900
N
0.468
OESDEN_01314
Oesophagostomum dentatum
OESDEN_01314
N
0.468
NECAME_01599
Necator americanus
NECAME_01599
N
0.468
ANCCEY_15918
Ancylostoma ceylanicum
ANCCEY_15918
N
0.468
ACAC_0000973801
Angiostrongylus cantonensis
ACAC_0000973801
N
0.468
ANCCAN_09463
Ancylostoma caninum
ANCCAN_09463
N
0.468
ANCCEY_15064
Ancylostoma ceylanicum
ANCCEY_15064
N
0.468
L898_g14011
Steinernema monticolum
L898_g14011
N
0.466
Sakowv30031460m.g
Saccoglossus kowalevskii
Sakowv30031460m.g
N
0.464
fgenesh2_pg.scaffold_1690000001
Branchiostoma floridae
fgenesh2_pg.scaffold_1690000001
N
0.463
DICVIV_02621
Dictyocaulus viviparus
DICVIV_02621
N
0.462
SSTP_0001127200
Strongyloides stercoralis
SSTP_0001127200
N
0.456
CGI_10018256
Crassostrea gigas
CGI_10018256
N
0.453
augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1
N
0.451
tetur31g01070
Tetranychus urticae
tetur31g01070
N
0.450
tetur31g00840
Tetranychus urticae
tetur31g00840
N
0.450
tetur31g00660
Tetranychus urticae
tetur31g00660
N
0.450
BXY_0575000
Bursaphelenchus xylophilus
BXY_0575000
N
0.448
WBGene00239172
Onchocerca volvulus
WBGene00239172
N
0.443
nDi.2.2.2.g01867
Dirofilaria immitis
nDi.2.2.2.g01867
N
0.443
LOAG_11340
Loa loa
LOAG_11340
N
0.443
Bm7765
Brugia malayi
Bm7765
N
0.443
WUBG_03167
Wuchereria bancrofti
WUBG_03167
N
0.443
Bm9369
Brugia malayi
Bm9369
N
0.443
OFLC_0000194401
Onchocerca flexuosa
OFLC_0000194401
N
0.443
nOo.2.0.1.g03638
Onchocerca ochengi
nOo.2.0.1.g03638
N
0.443
nLs.2.1.2.g07200
Litomosoides sigmodontis
nLs.2.1.2.g07200
N
0.443
nAv.1.0.1.g05839
Acanthocheilonema viteae
nAv.1.0.1.g05839
N
0.443
BTMF_0001523401
Brugia timori
BTMF_0001523401
N
0.443
EEL_0000724001
Elaeophora elaphi
EEL_0000724001
N
0.443
SNAPOd2T00002710001
Oikopleura dioica
SNAPOd2T00002710001
I
0.443
CJA17191
Caenorhabditis japonica
CJA17191
N
0.439
Hba_16915
Heterorhabditis bacteriophora
Hba_16915
I
0.437
DME_0000632401
Dracunculus medinensis
DME_0000632401
N
0.433
tetur21g01330
Tetranychus urticae
tetur21g01330
N
0.432
ACEP19638
Atta cephalotes
ACEP19638
I
0.432
AFUN005717
Anopheles funestus
AFUN005717
N
0.432
SBAD_0000070901
Soboliphyme baturini
SBAD_0000070901
I
0.430
D918_03887
Trichuris suis
D918_03887
N
0.429
L798_00437
Zootermopsis nevadensis
L798_00437
N
0.429
AMAM014030
Anopheles maculatus
AMAM014030
N
0.429
CPIJ003178
Culex quinquefasciatus
CPIJ003178
N
0.429
EFV52201
Trichinella spiralis
EFV52201
N
0.429
LotgiG176647
Lottia gigantea
LotgiG176647
N
0.429
PHUM393920
Pediculus humanus
PHUM393920
N
0.429
CpipJ_CPIJ003178
Culex pipiens
CpipJ_CPIJ003178
N
0.429
AEPI010254
Anopheles epiroticus
AEPI010254
N
0.429
AMIN005634
Anopheles minimus
AMIN005634
N
0.429
Minc18174
Meloidogyne incognita
Minc18174
N
0.428
genemark-nMf.1.1.scaf03789-processed-gene-0.2
Meloidogyne floridensis
genemark-nMf.1.1.scaf03789-processed-gene-0.2
N
0.428
PEQ_0000212901
Parascaris equorum
PEQ_0000212901
N
0.428
MhA1_Contig1224.frz3.gene1
Meloidogyne hapla
MhA1_Contig1224.frz3.gene1
N
0.426
LotgiG144192
Lottia gigantea
LotgiG144192
N
0.426
PEQ_0000291001
Parascaris equorum
PEQ_0000291001
I
0.425
MDOA008474
Musca domestica
MDOA008474
N
0.424
RSKR_0000620800
Rhabditophanes kr3021
RSKR_0000620800
N
0.422
TCM_014800
Theobroma cacao
TCM_014800
N
0.418
mgf006762m
Mimulus guttatus
mgf006762m
N
0.418
LCUP007789
Lucilia cuprina
LCUP007789
N
0.416