genemark-nMf.1.1.scaf06964-processed-gene-0.3 (Meloidogyne floridensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 genemark-nMf.1.1.scaf06964-processed-gene-0.3 T336323_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
genemark-nMf.1.1.scaf06964-processed-gene-0.3-mRNA-1 Sox 62 130
genemark-nMf.1.1.scaf06964-processed-gene-0.3-mRNA-1 Sox 148 216

Links

Other Sox family TFs
Other Meloidogyne floridensis TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 N 0.741
L893_g5947 Steinernema glaseri L893_g5947 N 0.660
SMUV_0000232601 Syphacia muris SMUV_0000232601 N 0.660
L892_g17551 Steinernema scapterisci L892_g17551 N 0.660
L596_g22130 Steinernema carpocapsae L596_g22130 N 0.660
ASU_03902 Ascaris suum ASU_03902 N 0.657
PEQ_0000150901 Parascaris equorum PEQ_0000150901 N 0.657
EVEC_0000577301 Enterobius vermicularis EVEC_0000577301 N 0.657
TCLT_0000879501 Thelazia callipaeda TCLT_0000879501 N 0.657
TCNE_0000567001 Toxocara canis TCNE_0000567001 N 0.657
L889_g13533 Steinernema feltiae L889_g13533 N 0.655
MhA1_Contig113.frz3.gene9 Meloidogyne hapla MhA1_Contig113.frz3.gene9 N 0.655
PTRK_0000986200 Parastrongyloides trichosuri PTRK_0000986200 N 0.653
SPAL_0001030300 Strongyloides papillosus SPAL_0001030300 N 0.653
SSTP_0000371800 Strongyloides stercoralis SSTP_0000371800 N 0.653
Bm4180 Brugia malayi Bm4180 N 0.653
nAv.1.0.1.g02101 Acanthocheilonema viteae nAv.1.0.1.g02101 N 0.653
EEL_0000068601 Elaeophora elaphi EEL_0000068601 N 0.653
WBGene00245261 Onchocerca volvulus WBGene00245261 N 0.653
LOAG_04936 Loa loa LOAG_04936 N 0.653
SVE_0494300 Strongyloides venezuelensis SVE_0494300 N 0.653
nDi.2.2.2.g04979 Dirofilaria immitis nDi.2.2.2.g04979 N 0.653
Minc03268 Meloidogyne incognita Minc03268 N 0.652
Minc08988 Meloidogyne incognita Minc08988 N 0.652
DME_0001055201 Dracunculus medinensis DME_0001055201 N 0.646
RSKR_0000605700 Rhabditophanes kr3021 RSKR_0000605700 N 0.640
NBR_0000911001 Nippostrongylus brasiliensis NBR_0000911001 N 0.638
HCOI00860100 Haemonchus contortus HCOI00860100 N 0.638
TELCIR_07111 Teladorsagia circumcincta TELCIR_07111 N 0.638
NECAME_09126 Necator americanus NECAME_09126 N 0.638
ACOC_0000768601 Angiostrongylus costaricensis ACOC_0000768601 N 0.638
Hba_13817 Heterorhabditis bacteriophora Hba_13817 N 0.635
WUBG_12099 Wuchereria bancrofti WUBG_12099 N 0.632
Ppa-hmg-1.2 Pristionchus pacificus PPA02361 N 0.630
ANCCAN_10156 Ancylostoma caninum ANCCAN_10156 N 0.630
scaffold580-EXSNAP2012.5 Pristionchus exspectatus scaffold580-EXSNAP2012.5 N 0.630
TTRE_0000338301 Trichuris trichiura TTRE_0000338301 N 0.626
D918_07195 Trichuris suis D918_07195 N 0.626
ASIM_0000048401 Anisakis simplex ASIM_0000048401 N 0.625
SBAD_0000405201 Soboliphyme baturini SBAD_0000405201 N 0.613
TMUE_s0235000800 Trichuris muris TMUE_s0235000800 N 0.611
D917_08189 Trichinella nativa D917_08189 N 0.611
CJA09678 Caenorhabditis japonica CJA09678 N 0.609
CBG17468 Caenorhabditis briggsae CBG17468 N 0.609
CBN17977 Caenorhabditis brenneri CBN17977 N 0.609
hmg-1.2 Caenorhabditis elegans WBGene00001972 N 0.605
Minc01077 Meloidogyne incognita Minc01077 N 0.603
BXY_1555400 Bursaphelenchus xylophilus BXY_1555400 N 0.589
nLs.2.1.2.g00300 Litomosoides sigmodontis nLs.2.1.2.g00300 N 0.589
ANCCEY_10333 Ancylostoma ceylanicum ANCCEY_10333 N 0.582
nRc.2.0.1.g43473 Romanomermis culicivorax nRc.2.0.1.g43473 N 0.579
CJA42049 Caenorhabditis japonica CJA42049 N 0.578
EFV53345 Trichinella spiralis EFV53345 N 0.576
D917_01254 Trichinella nativa D917_01254 N 0.573
EFV57410 Trichinella spiralis EFV57410 N 0.573
ACAC_0001052301 Angiostrongylus cantonensis ACAC_0001052301 N 0.568
CRE02943 Caenorhabditis remanei CRE02943 N 0.564
GPUH_0001544201 Gongylonema pulchrum GPUH_0001544201 N 0.549
TELCIR_06008 Teladorsagia circumcincta TELCIR_06008 N 0.506
TsM_000115400 Taenia solium TsM_000115400 N 0.500
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.500
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.497
fgenesh2_pm.scaffold_24000033 Branchiostoma floridae fgenesh2_pm.scaffold_24000033 N 0.488
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.485
SROB_0000153901 Schistosoma rodhaini SROB_0000153901 N 0.483
Smp_000980 Schistosoma mansoni Smp_000980 N 0.483
SMTD_0001194601 Schistosoma mattheei SMTD_0001194601 N 0.483
SCUD_0000020101 Schistosoma curassoni SCUD_0000020101 N 0.483
HNAJ_0001249801 Hymenolepis nana HNAJ_0001249801 N 0.482
HDID_0000237901 Hymenolepis diminuta HDID_0000237901 N 0.482
HmN_000466000 Hymenolepis microstoma HmN_000466000 N 0.482
CGI_10023724 Crassostrea gigas CGI_10023724 N 0.482
CapteG158220 Capitella teleta CapteG158220 N 0.479
BXY_1714600 Bursaphelenchus xylophilus BXY_1714600 N 0.474
T265_12733 Opisthorchis viverrini T265_12733 N 0.474
HelroG157878 Helobdella robusta HelroG157878 N 0.471
SMU15030256 Schmidtea mediterranea SMU15030256 N 0.469
TTAC_0000225801 Hydatigera taeniaeformis TTAC_0000225801 N 0.463
ECANG7_02036 Echinococcus canadensis ECANG7_02036 N 0.463
ENSAMXG00000014031 Astyanax mexicanus ENSAMXG00000014031 N 0.458
AAI68534 Xenopus tropicalis AAI68534 N 0.457
D915_00818 Fasciola hepatica D915_00818 N 0.456
PXEA_0000637001 Protopolystoma xenopodis PXEA_0000637001 N 0.451
AMIN005344 Anopheles minimus AMIN005344 N 0.448
ASIS000124 Anopheles sinensis ASIS000124 N 0.448
AMEM017336 Anopheles merus AMEM017336 N 0.448
AARA010318 Anopheles arabiensis AARA010318 N 0.448
AALB006743 Anopheles albimanus AALB006743 N 0.448
AGAP000005 Anopheles gambiae AGAP000005 N 0.448
AMEC021909 Anopheles melas AMEC021909 N 0.448
Sjc_0031360 Schistosoma japonicum Sjc_0031360 N 0.448
ADAC001494 Anopheles darlingi ADAC001494 N 0.448
AAEL011380 Aedes aegypti AAEL011380 N 0.448
AATE018776 Anopheles atroparvus AATE018776 N 0.448
ACUA021022 Anopheles culicifacies ACUA021022 N 0.448
AFUN010134 Anopheles funestus AFUN010134 N 0.448
AMAM015540 Anopheles maculatus AMAM015540 N 0.448
ISCW017350 Ixodes scapularis ISCW017350 N 0.448
AFAF003948 Anopheles farauti AFAF003948 N 0.448
AEPI002924 Anopheles epiroticus AEPI002924 N 0.448
ADIR011701 Anopheles dirus ADIR011701 N 0.448
ENSPFOG00000008464 Poecilia formosa ENSPFOG00000008464 N 0.446
SMAR013695 Strigamia maritima SMAR013695 N 0.446
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.443
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N 0.440
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.439
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.439
hmg1/2 Ciona intestinalis ENSCING00000004075 N 0.437
DILT_0001497901 Diphyllobothrium latum DILT_0001497901 N 0.436
SSLN_0000493501 Schistocephalus solidus SSLN_0000493501 N 0.436
hmgb2a Danio rerio ENSDARG00000029722 N 0.435
hmgb1a Takifugu rubripes ENSTRUG00000008452 N 0.434
CpipJ_CPIJ014043 Culex pipiens CpipJ_CPIJ014043 N 0.434
CPIJ014043 Culex quinquefasciatus CPIJ014043 N 0.434
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N 0.432
Cflo_05895--XP_001121384.1_APIME Camponotus floridanus Cflo_05895--XP_001121384.1_APIME N 0.432
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N 0.432
Hsal_13110--XP_001121384.1_APIME Harpegnathos saltator Hsal_13110--XP_001121384.1_APIME N 0.432
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N 0.432
HelroG87827 Helobdella robusta HelroG87827 N 0.431
ENSCSAVG00000000341 Ciona savignyi ENSCSAVG00000000341 N 0.430
YQE_03203 Dendroctonus ponderosae YQE_03203 N 0.429
ACEP16613 Atta cephalotes ACEP16613 N 0.428
SINV22586 Solenopsis invicta SINV22586 N 0.428
NV15664 Nasonia vitripennis NV15664 N 0.428
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N 0.426
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N 0.425
SSLN_0001302101 Schistocephalus solidus SSLN_0001302101 N 0.425
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N 0.425
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N 0.425
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N 0.425
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N 0.425
DAPPUDRAFT_232871 Daphnia pulex DAPPUDRAFT_232871 N 0.424
T265_10726 Opisthorchis viverrini T265_10726 N 0.424
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.422
PXEA_0000566701 Protopolystoma xenopodis PXEA_0000566701 N 0.422
HelroG157726 Helobdella robusta HelroG157726 N 0.421
Aqu1.227714 Amphimedon queenslandica Aqu1.227714 N 0.421
GE17263 Drosophila yakuba FBgn0234741 N 0.420
AQUA004962 Anopheles quadriannulatus AQUA004962 N 0.420
GD17278 Drosophila simulans FBgn0188840 N 0.420
GG17955 Drosophila erecta FBgn0110175 N 0.420
Dsp1 Drosophila melanogaster FBgn0011764 N 0.420
ENSOCUG00000004133 Oryctolagus cuniculus ENSOCUG00000004133 N 0.420
GA11488 Drosophila pseudoobscura FBgn0071539 N 0.420
GF19115 Drosophila ananassae FBgn0096126 N 0.420
SMU15027649 Schmidtea mediterranea SMU15027649 N 0.419
ENSFCAG00000028961 Felis catus ENSFCAG00000028961 N 0.419
ENSAMXG00000014832 Astyanax mexicanus ENSAMXG00000014832 N 0.418
GI10980 Drosophila mojavensis FBgn0133743 N 0.416
LCUP007363 Lucilia cuprina LCUP007363 N 0.416
GPLIN_000727200 Globodera pallida GPLIN_000727200 N 0.416
GK25058 Drosophila willistoni FBgn0227017 N 0.416
GJ19445 Drosophila virilis FBgn0206588 N 0.416
GH12282 Drosophila grimshawi FBgn0119761 N 0.416