GPLIN_000727200 (Globodera pallida)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 GPLIN_000727200 T336345_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000727200 Sox 1 28
GPLIN_000727200 Sox 46 114

Links

Other Sox family TFs
Other Globodera pallida TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
L596_g22130 Steinernema carpocapsae L596_g22130 N 0.672
csin104030 Clonorchis sinensis csin104030 N 0.583
TRE_0001071501 Trichobilharzia regenti TRE_0001071501 N 0.583
ECPE_0001091201 Echinostoma caproni ECPE_0001091201 N 0.583
ECPE_0001414101 Echinostoma caproni ECPE_0001414101 N 0.553
Ocbimv22036873m.g Octopus bimaculoides Ocbimv22036873m.g N 0.551
GL15829 Drosophila persimilis FBgn0153433 N 0.538
ASTEI11547 Anopheles stephensi ASTEI11547 N 0.534
ENSTGUG00000006267 Taeniopygia guttata ENSTGUG00000006267 N 0.529
Gfo_R010508 Geospiza fortis Gfo_R010508 N 0.527
MDOA008389 Musca domestica MDOA008389 N 0.527
ENSETEG00000016379 Echinops telfairi ENSETEG00000016379 N 0.517
MESCA001453 Megaselia scalaris MESCA001453 N 0.513
BXY_1714600 Bursaphelenchus xylophilus BXY_1714600 N 0.509
HMGB2 Ornithorhynchus anatinus ENSOANG00000029120 N 0.503
HMGB1 Tupaia belangeri ENSTBEG00000013046 N 0.501
TELCIR_06008 Teladorsagia circumcincta TELCIR_06008 N 0.492
GPUH_0001544201 Gongylonema pulchrum GPUH_0001544201 N 0.485
CLEC007928 Cimex lectularius CLEC007928 N 0.465
L892_g11245 Steinernema scapterisci L892_g11245 N 0.446
ENSDNOG00000046638 Dasypus novemcinctus ENSDNOG00000046638 N 0.444
ENSDNOG00000034905 Dasypus novemcinctus ENSDNOG00000034905 N 0.443
ENSAMEG00000008824 Ailuropoda melanoleuca ENSAMEG00000008824 N 0.440
ANCDUO_06482 Ancylostoma duodenale ANCDUO_06482 N 0.440
genemark-nMf.1.1.scaf06964-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf06964-processed-gene-0.3 N 0.416
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 N 0.416