GPUH_0001970101 (Gongylonema pulchrum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 GPUH_0001970101 T336373_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gei-3
M00711_2.00
Caenorhabditis elegans
NWNWMWDN

NHWKWNWN
PBM
Narasimhan et al.(2015)
pTH10038
0.647 0.815
Cic
M00195_2.00
Mus musculus
NNTGCTGABN

NVTCAGCANN
PBM
Badis et al.(2009)
Cic_3454
0.614 0.862
cic
M06452_2.00
Drosophila melanogaster
YYCATTSA

TSAATGRR
B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386
0.575 0.723
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPUH_0001970101-mRNA-1 Sox 1 65

Links

Other Sox family TFs
Other Gongylonema pulchrum TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL004381 Aedes aegypti AAEL004381 I 0.621
AALB003439 Anopheles albimanus AALB003439 I 0.612
AARA001217 Anopheles arabiensis AARA001217 I 0.612
ACEP13490 Atta cephalotes ACEP13490 I 0.455
ACEP13631 Atta cephalotes ACEP13631 I 0.451
ACEP18843 Atta cephalotes ACEP18843 I 0.614
ACHR006446 Anopheles christyi ACHR006446 I 0.612
ACUA015009 Anopheles culicifacies ACUA015009 I 0.612
ACYPI004663 Acyrthosiphon pisum ACYPI004663 I 0.608
ADAC008993 Anopheles darlingi ADAC008993 I 0.612
ADIR000881 Anopheles dirus ADIR000881 I 0.419
ADIR003322 Anopheles dirus ADIR003322 I 0.612
AEPI005675 Anopheles epiroticus AEPI005675 I 0.612
AFAF009600 Anopheles farauti AFAF009600 I 0.612
AFUN006011 Anopheles funestus AFUN006011 I 0.612
AGAP013411 Anopheles gambiae AGAP013411 I 0.612
Alligator_sinensis_CCG005631.1 Alligator sinensis Alligator_sinensis_CCG005631.1 I 0.614
AMAM017484 Anopheles maculatus AMAM017484 I 0.612
AMEC010127 Anopheles melas AMEC010127 I 0.612
AMEM005678 Anopheles merus AMEM005678 I 0.612
AMIN003810 Anopheles minimus AMIN003810 I 0.612
ANCCAN_00149 Ancylostoma caninum ANCCAN_00149 I 0.658
ANCCEY_04123 Ancylostoma ceylanicum ANCCEY_04123 I 0.658
ANCDUO_05529 Ancylostoma duodenale ANCDUO_05529 I 0.658
AQUA008168 Anopheles quadriannulatus AQUA008168 I 0.612
ASIM_0000334601 Anisakis simplex ASIM_0000334601 I 0.672
ASTEI00261 Anopheles stephensi ASTEI00261 I 0.612
ASTEI07817 Anopheles stephensi ASTEI07817 I 0.419
ASU_10300 Ascaris suum ASU_10300 I 0.672
BGIBMGA010263 Bombyx mori BGIBMGA010263 I 0.615
BGIBMGA011668 Bombyx mori BGIBMGA011668 I 0.437
BGLB001462 Biomphalaria glabrata BGLB001462 I 0.599
Bm5934 Brugia malayi Bm5934 I 0.672
BTMF_0001637101 Brugia timori BTMF_0001637101 I 0.565
B_00914 Schistosoma haematobium B_00914 I 0.603
CapteG223458 Capitella teleta CapteG223458 I 0.420
CapteG39110 Capitella teleta CapteG39110 I 0.420
CapteG39126 Capitella teleta CapteG39126 I 0.614
CBG00068 Caenorhabditis briggsae CBG00068 I 0.535
CBN17413 Caenorhabditis brenneri CBN17413 I 0.651
Cflo_01544--XP_624175.2_APIME Camponotus floridanus Cflo_01544--XP_624175.2_APIME I 0.608
CGI_10015746 Crassostrea gigas CGI_10015746 I 0.614
CGI_10018417 Crassostrea gigas CGI_10018417 I 0.425
CIC Sus scrofa ENSSSCG00000003030 I 0.614
CIC Tetraodon nigroviridis ENSTNIG00000003521 I 0.614
cic Xenopus tropicalis XB-GENE-6467430 I 0.614
CIC Procavia capensis ENSPCAG00000017001 I 0.608
CIC Tupaia belangeri ENSTBEG00000009044 I 0.614
CIC Tursiops truncatus ENSTTRG00000013873 I 0.614
cic Drosophila melanogaster FBgn0262582 D 0.575
CIC Pan troglodytes ENSPTRG00000011051 I 0.614
CIC Pteropus vampyrus ENSPVAG00000016806 I 0.614
Cic Rattus norvegicus ENSRNOG00000056118 I 0.614
CIC Otolemur garnettii ENSOGAG00000003964 I 0.614
CIC Dasypus novemcinctus ENSDNOG00000047657 I 0.614
Cic Dipodomys ordii ENSDORG00000008822 I 0.614
CIC Echinops telfairi ENSETEG00000017271 I 0.614
CIC Callithrix jacchus ENSCJAG00000012847 I 0.614
CIC Homo sapiens ENSG00000079432 I 0.614
CIC Gorilla gorilla ENSGGOG00000000192 I 0.614
CIC Canis familiaris ENSCAFG00000004858 I 0.614
CIC Equus caballus ENSECAG00000011342 I 0.614
CIC Takifugu rubripes ENSTRUG00000007193 I 0.614
Cic Mus musculus ENSMUSG00000005442 D 0.614
cica Danio rerio ENSDARG00000071150 I 0.623
cica Oryzias latipes ENSORLG00000007091 I 0.608
cicb Oryzias latipes ENSORLG00000013259 I 0.614
cicb Gasterosteus aculeatus ENSGACG00000009452 I 0.614
CJA07419 Caenorhabditis japonica CJA07419 I 0.651
CLEC003268 Cimex lectularius CLEC003268 I 0.614
Cmyd_10001800 Chelonia mydas Cmyd_10001800 I 0.614
CPIJ012202 Culex quinquefasciatus CPIJ012202 I 0.612
CpipJ_CPIJ012202 Culex pipiens CpipJ_CPIJ012202 I 0.612
CRE24068 Caenorhabditis remanei CRE24068 I 0.607
csin104163 Clonorchis sinensis csin104163 I 0.574
D915_09544 Fasciola hepatica D915_09544 I 0.513
D917_02434 Trichinella nativa D917_02434 I 0.614
D918_06270 Trichuris suis D918_06270 I 0.614
DAPPUDRAFT_37735 Daphnia pulex DAPPUDRAFT_37735 I 0.447
DEHA2E09460g Debaryomyces hansenii DEHA2E09460g I 0.428
ECPE_0001539401 Echinostoma caproni ECPE_0001539401 I 0.548
EFV48447 Trichinella spiralis EFV48447 I 0.446
ENSAMXG00000014362 Astyanax mexicanus ENSAMXG00000014362 I 0.623
ENSAMXG00000018358 Astyanax mexicanus ENSAMXG00000018358 I 0.614
ENSBTAG00000019785 Bos taurus ENSBTAG00000019785 I 0.614
ENSCING00000007655 Ciona intestinalis ENSCING00000007655 I 0.579
ENSCPOG00000004391 Cavia porcellus ENSCPOG00000004391 I 0.614
ENSFCAG00000012737 Felis catus ENSFCAG00000012737 I 0.614
ENSGMOG00000005167 Gadus morhua ENSGMOG00000005167 I 0.614
ENSLACG00000002764 Latimeria chalumnae ENSLACG00000002764 I 0.614
ENSLOCG00000004648 Lepisosteus oculatus ENSLOCG00000004648 I 0.446
ENSMEUG00000016625 Macropus eugenii ENSMEUG00000016625 I 0.614
ENSMICG00000015176 Microcebus murinus ENSMICG00000015176 I 0.614
ENSMLUG00000016650 Myotis lucifugus ENSMLUG00000016650 I 0.614
ENSMMUG00000012174 Macaca mulatta ENSMMUG00000012174 I 0.614
ENSMPUG00000007557 Mustela putorius furo ENSMPUG00000007557 I 0.614
ENSNLEG00000010614 Nomascus leucogenys ENSNLEG00000010614 I 0.614
ENSOARG00000007985 Ovis aries ENSOARG00000007985 I 0.614
ENSOCUG00000006458 Oryctolagus cuniculus ENSOCUG00000006458 I 0.614
ENSONIG00000004979 Oreochromis niloticus ENSONIG00000004979 I 0.617
ENSONIG00000013108 Oreochromis niloticus ENSONIG00000013108 I 0.614
ENSP00000160740 Macaca fascicularis ENSP00000160740 I 0.614
ENSP00000160740-D1 Bos grunniens ENSP00000160740-D1 I 0.614
ENSPANG00000009039 Papio anubis ENSPANG00000009039 I 0.614
ENSPFOG00000000116 Poecilia formosa ENSPFOG00000000116 I 0.614
ENSPFOG00000016231 Poecilia formosa ENSPFOG00000016231 I 0.614
ENSPPYG00000010041 Pongo abelii ENSPPYG00000010041 I 0.614
ENSSTOG00000000852 Ictidomys tridecemlineatus ENSSTOG00000000852 I 0.614
EVEC_0000011601 Enterobius vermicularis EVEC_0000011601 I 0.610
fgenesh1_pg.scaffold_35000054 Monosiga brevicollis fgenesh1_pg.scaffold_35000054 I 0.475
GA30228 Drosophila pseudoobscura FBgn0263363 I 0.548
GALMADRAFT_340474 Galerina marginata GALMADRAFT_340474 I 0.445
GB43462 Apis mellifera GB43462 I 0.614
GD19345 Drosophila simulans FBgn0190847 I 0.575
GE25659 Drosophila yakuba FBgn0242721 I 0.575
gei-3 Caenorhabditis elegans WBGene00001560 D 0.647
GF17645 Drosophila ananassae FBgn0094663 I 0.575
GG23823 Drosophila erecta FBgn0115962 I 0.575
GH23608 Drosophila grimshawi FBgn0131065 I 0.561
GI22721 Drosophila mojavensis FBgn0145448 I 0.548
GJ23448 Drosophila virilis FBgn0210547 I 0.575
GK10919 Drosophila willistoni FBgn0212930 I 0.575
GL12097 Drosophila persimilis FBgn0149705 I 0.548
GM23104 Drosophila sechellia FBgn0177972 I 0.575
GNLVRS01_PISO0K11912g Millerozyma farinosa GNLVRS01_PISO0K11912g I 0.428
GNLVRS01_PISO0L11913g Millerozyma farinosa GNLVRS01_PISO0L11913g I 0.428
gw.448.64.1 Branchiostoma floridae gw.448.64.1 I 0.614
gw.46.292.1 Branchiostoma floridae gw.46.292.1 I 0.614
Hba_18941 Heterorhabditis bacteriophora Hba_18941 I 0.658
HelroG148142 Helobdella robusta HelroG148142 I 0.476
HHAL000065-PA Halyomorpha halys HHAL000065-PA I 0.608
HMEL002398 Heliconius melpomene HMEL002398 I 0.445
HMEL006651 Heliconius melpomene HMEL006651 I 0.487
Hsal_01854--XP_624175.2_APIME Harpegnathos saltator Hsal_01854--XP_624175.2_APIME I 0.418
Hsal_08911--XP_624175.2_APIME Harpegnathos saltator Hsal_08911--XP_624175.2_APIME I 0.605
KGM_16790 Danaus plexippus KGM_16790 I 0.473
KGM_16941 Danaus plexippus KGM_16941 I 0.608
L596_g5739 Steinernema carpocapsae L596_g5739 I 0.657
L798_05271 Zootermopsis nevadensis L798_05271 I 0.451
L798_08623 Zootermopsis nevadensis L798_08623 I 0.599
L889_g11174 Steinernema feltiae L889_g11174 I 0.657
L892_g3879 Steinernema scapterisci L892_g3879 I 0.665
L893_g26751 Steinernema glaseri L893_g26751 I 0.657
L898_g8837 Steinernema monticolum L898_g8837 I 0.657
LCUP009387 Lucilia cuprina LCUP009387 I 0.575
LDEC018997 Leptinotarsa decemlineata LDEC018997 I 0.692
LLOJ007756 Lutzomyia longipalpis LLOJ007756 I 0.626
LOAG_17202 Loa loa LOAG_17202 I 0.672
LotgiG100217 Lottia gigantea LotgiG100217 I 0.447
LotgiG89909 Lottia gigantea LotgiG89909 I 0.425
MCINX015089 Melitaea cinxia MCINX015089 I 0.608
MDOA004531 Musca domestica MDOA004531 I 0.575
Myotis_brandtii_Cic_10007129 Myotis brandtii Myotis_brandtii_Cic_10007129 I 0.614
nAv.1.0.1.g00032 Acanthocheilonema viteae nAv.1.0.1.g00032 I 0.668
nDi.2.2.2.g01012 Dirofilaria immitis nDi.2.2.2.g01012 I 0.672
NECAME_00080 Necator americanus NECAME_00080 I 0.490
NEMVEDRAFT_v1g122926 Nematostella vectensis NEMVEDRAFT_v1g122926 I 0.445
nLs.2.1.2.g07996 Litomosoides sigmodontis nLs.2.1.2.g07996 I 0.672
nOo.2.0.1.g00287 Onchocerca ochengi nOo.2.0.1.g00287 I 0.672
NV10910 Nasonia vitripennis NV10910 I 0.614
Ocbimv22001036m.g Octopus bimaculoides Ocbimv22001036m.g I 0.469
Ocbimv22037932m.g Octopus bimaculoides Ocbimv22037932m.g I 0.608
OESDEN_00065 Oesophagostomum dentatum OESDEN_00065 I 0.658
OFLC_0001331401 Onchocerca flexuosa OFLC_0001331401 I 0.672
Ogr10275 Ophisaurus gracilis Ogr10275 I 0.614
PHUM079880 Pediculus humanus PHUM079880 I 0.621
PTRK_0000169700 Parastrongyloides trichosuri PTRK_0000169700 I 0.600
PTSG_01623 Salpingoeca rosetta PTSG_01623 I 0.433
Pvit_02876 Pogona vitticeps Pvit_02876 I 0.614
RPRC001090 Rhodnius prolixus RPRC001090 I 0.608
RSKR_0000077800 Rhabditophanes kr3021 RSKR_0000077800 I 0.572
Sakowv30042695m.g Saccoglossus kowalevskii Sakowv30042695m.g I 0.614
SBAD_0000026401 Soboliphyme baturini SBAD_0000026401 I 0.598
scaffold4-EXSNAP2012.129 Pristionchus exspectatus scaffold4-EXSNAP2012.129 I 0.616
SCUD_0001673101 Schistosoma curassoni SCUD_0001673101 I 0.603
Sjc_0093980 Schistosoma japonicum Sjc_0093980 I 0.603
SMAR009315 Strigamia maritima SMAR009315 I 0.608
Smp_142600 Schistosoma mansoni Smp_142600 I 0.603
SMU15002098 Schmidtea mediterranea SMU15002098 I 0.598
SMUV_0001072601 Syphacia muris SMUV_0001072601 I 0.610
SNAPOd2T00000335001 Oikopleura dioica SNAPOd2T00000335001 I 0.531
SPAL_0001296500 Strongyloides papillosus SPAL_0001296500 I 0.600
SPU_025292 Strongylocentrotus purpuratus SPU_025292 I 0.608
SSLN_0000478501 Schistocephalus solidus SSLN_0000478501 I 0.426
SSTP_0000494800 Strongyloides stercoralis SSTP_0000494800 I 0.600
SVE_0052600 Strongyloides venezuelensis SVE_0052600 I 0.600
SVUK_0000932601 Strongylus vulgaris SVUK_0000932601 I 0.653
T265_01499 Opisthorchis viverrini T265_01499 I 0.574
TC004697 Tribolium castaneum TC004697 I 0.614
TCLT_0000608401 Thelazia callipaeda TCLT_0000608401 I 0.665
TELCIR_02356 Teladorsagia circumcincta TELCIR_02356 I 0.481
tetur21g00740 Tetranychus urticae tetur21g00740 I 0.599
TMUE_s0223001200 Trichuris muris TMUE_s0223001200 I 0.614
TTRE_0000098801 Trichuris trichiura TTRE_0000098801 I 0.614
WBGene00241539 Onchocerca volvulus WBGene00241539 I 0.672
WUBG_04884 Wuchereria bancrofti WUBG_04884 I 0.672
XP_002160522.1 Hydra magnipapillata XP_002160522.1 I 0.529
YQE_03282 Dendroctonus ponderosae YQE_03282 I 0.630