CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MCOS_0000670801
(
Mesocestoides corti
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
MCOS_0000670801
T336606_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sox6
M00828_2.00
Mus musculus
WTTGTNNNN
NNNNACAAW
PBM
Weirauch et al.(2013)
pTH3862
0.444
0.449
SOX6
M05892_2.00
Homo sapiens
DRACAATRVN
NBYATTGTYH
SMiLE-seq
Isakova et al.(2017)
SOX6
0.444
0.449
Sox6
M08169_2.00
Mus musculus
BCWTTGTYYY
RRRACAAWGV
ChIP-seq
Mathelier et al.(2014)
MA0515.1
0.444
0.449
Sox6
M09640_2.00
Mus musculus
BHWTTGTBNN
NNVACAAWDV
Misc
Heinz et al.(2010)
Myotubes-Sox6_GSE32627
0.444
0.449
SOX6
M11300_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX6_Q5
0.444
0.449
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.416
0.348
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.416
0.348
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MCOS_0000670801-mRNA-1
Sox
76
144
TPRPLNSFMIFAQHIRRNVLAIFEAASSSNVSRLLGEAWNSISKEVRAAYDEEAARLSKIHNIEFPTYK
Links
Other
Sox
family TFs
Other
Mesocestoides corti
TFs
211 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy