nLs.2.1.2.g07996 (Litomosoides sigmodontis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 nLs.2.1.2.g07996 T336717_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gei-3
M00711_2.00
Caenorhabditis elegans
NWNWMWDN

NHWKWNWN
PBM
Narasimhan et al.(2015)
pTH10038
0.715 0.812
Cic
M00195_2.00
Mus musculus
NNTGCTGABN

NVTCAGCANN
PBM
Badis et al.(2009)
Cic_3454
0.683 0.884
cic
M06452_2.00
Drosophila melanogaster
YYCATTSA

TSAATGRR
B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386
0.644 0.754
bbx
M03975_2.00
Drosophila melanogaster
NAACAATDNCATTGTTN

NAACAATGNHATTGTTN
SELEX
Nitta et al.(2015)
bbx_1
0.468 0.551
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN

NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.449 0.348
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS

SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.449 0.348
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN

NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.449 0.348
ROX1
M11346_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.449 0.348
ROX1
M11347_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.449 0.348
BBX
M05763_2.00
Homo sapiens
TGAWCDNYGWTCA

TGAWCRNHGWTCA
SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX
0.427 0.536
BBX
M05764_2.00
Homo sapiens
TGAACDNYGTTCA

TGAACRNHGTTCA
SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX
0.427 0.536
Sox8
M00197_2.00
Mus musculus
NNNWBAAT

ATTVWNNN
PBM
Badis et al.(2009)
Sox8_1733
0.423 0.362
SOX8
M03483_2.00
Homo sapiens
AACAATRTGCAGTGTT

AACACTGCAYATTGTT
SELEX
Jolma et al.(2013)
SOX8_1
0.423 0.362
SOX8
M03484_2.00
Homo sapiens
ATGAATTKCAGTC

GACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX8_2
0.423 0.362
SOX8
M03485_2.00
Homo sapiens
RAACAATTKCAGTGTTN

NAACACTGMAATTGTTY
SELEX
Jolma et al.(2013)
SOX8_3
0.423 0.362
SOX8
M03486_2.00
Homo sapiens
HATCAATTKCAGTGATN

NATCACTGMAATTGATD
SELEX
Jolma et al.(2013)
SOX8_4
0.423 0.362
SOX8
M03487_2.00
Homo sapiens
TGAATRTKCAGTCA

TGACTGMAYATTCA
SELEX
Jolma et al.(2013)
SOX8_5
0.423 0.362
SOX8
M03488_2.00
Homo sapiens
AACAATTDCAGTGTT

AACACTGHAATTGTT
SELEX
Jolma et al.(2013)
SOX8_6
0.423 0.362
SOX8
M03489_2.00
Homo sapiens
ATGAATTKCAGTC

GACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX8_7
0.423 0.362
SOX8
M03490_2.00
Homo sapiens
MATCAATTGCAGTGATK

MATCACTGCAATTGATK
SELEX
Jolma et al.(2013)
SOX8_8
0.423 0.362
SOX9
M03501_2.00
Homo sapiens
DDACAATRV

BYATTGTHH
SELEX
Jolma et al.(2013)
SOX9_1
0.423 0.362
SOX9
M03502_2.00
Homo sapiens
AACAATRTGCAGTGTT

AACACTGCAYATTGTT
SELEX
Jolma et al.(2013)
SOX9_2
0.423 0.362
SOX9
M03503_2.00
Homo sapiens
ATCAATRTKCAGTGAT

ATCACTGMAYATTGAT
SELEX
Jolma et al.(2013)
SOX9_3
0.423 0.362
SOX9
M03504_2.00
Homo sapiens
ATGAATRTKCAGTCAT

ATGACTGMAYATTCAT
SELEX
Jolma et al.(2013)
SOX9_4
0.423 0.362
SOX9
M03505_2.00
Homo sapiens
RAACAATTKCAGTGTTH

DAACACTGMAATTGTTY
SELEX
Jolma et al.(2013)
SOX9_5
0.423 0.362
SOX9
M03506_2.00
Homo sapiens
NATCAATKKYAGTGATN

NATCACTRMMATTGATN
SELEX
Jolma et al.(2013)
SOX9_6
0.423 0.362
SOX9
M03507_2.00
Homo sapiens
NATGAATTKCAGTCATN

NATGACTGMAATTCATN
SELEX
Jolma et al.(2013)
SOX9_7
0.423 0.362
SOX8
M05749_2.00
Homo sapiens
NDAACAATRV

BYATTGTTHN
SELEX
Yin et al.(2017)
SOX8_eDBD_HT-SELEX
0.423 0.362
SOX8
M05751_2.00
Homo sapiens
ACAATRVNNBYATTGT

ACAATRVNNBYATTGT
SELEX
Yin et al.(2017)
SOX8_FL_HT-SELEX
0.423 0.362
SOX9
M05767_2.00
Homo sapiens
HDAACAATRV

BYATTGTTHD
SELEX
Yin et al.(2017)
SOX9_eDBD_HT-SELEX
0.423 0.362
SOX9
M02716_2.00
Homo sapiens
DAACAATRG

CYATTGTTH
SELEX
Mathelier et al.(2014)
MA0077.1
0.423 0.362
SOX9
M09389_2.00
Homo sapiens
RMACAAWGVNNBYHTT

AADRVNNBCWTTGTKY
Misc
Kulakovskiy et al.(2013)
SOX9_HUMAN.H11MO.0.B
0.423 0.362
Sox9
M09399_2.00
Mus musculus
RMACAAWGVNNBYHTT

AADRVNNBCWTTGTKY
Misc
Kulakovskiy et al.(2013)
SOX9_MOUSE.H11MO.0.A
0.423 0.362
SOX9
M11304_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_09
0.423 0.362
SOX9
M11305_2.00
Homo sapiens
NNNDAACAATRRNN

NNYYATTGTTHNNN
Transfac
Matys et al.(2006)
V$SOX9_B1
0.423 0.362
SOX9
M11306_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_Q4
0.423 0.362
SOX9
M11307_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_Q5
0.423 0.362
SOX8
M05750_2.00
Homo sapiens
BYATTGTTNN

NNAACAATRV
SELEX
Yin et al.(2017)
SOX8_eDBD_Methyl-HT-SELEX
0.423 0.362
SOX8
M05752_2.00
Homo sapiens
ACAATRVNNBYATTGT

ACAATRVNNBYATTGT
SELEX
Yin et al.(2017)
SOX8_FL_Methyl-HT-SELEX
0.423 0.362
SOX9
M05768_2.00
Homo sapiens
NNNACAATRS

SYATTGTNNN
SELEX
Yin et al.(2017)
SOX9_eDBD_Methyl-HT-SELEX
0.423 0.362
Sox10
M00826_2.00
Mus musculus
NNNNWBAAT

ATTVWNNNN
PBM
Weirauch et al.(2013)
pTH1729
0.423 0.348
SOX10
M03491_2.00
Homo sapiens
AACAATTKCAGTGTT

AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
SOX10_1
0.423 0.348
SOX10
M03492_2.00
Homo sapiens
AACAATRTKCAGTGTT

AACACTGMAYATTGTT
SELEX
Jolma et al.(2013)
SOX10_2
0.423 0.348
SOX10
M03493_2.00
Homo sapiens
ATCAATTKCAGTGAT

ATCACTGMAATTGAT
SELEX
Jolma et al.(2013)
SOX10_3
0.423 0.348
SOX10
M03494_2.00
Homo sapiens
ATGAATTKCAGTCAT

ATGACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX10_4
0.423 0.348
SOX10
M03495_2.00
Homo sapiens
TGAATGTKCAGTCA

TGACTGMACATTCA
SELEX
Jolma et al.(2013)
SOX10_5
0.423 0.348
Sox10
M03535_2.00
Mus musculus
AACAATTKCAGTGTT

AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
Sox10_1
0.423 0.348
Sox10
M03536_2.00
Mus musculus
ATCAATTKCAGTGAT

ATCACTGMAATTGAT
SELEX
Jolma et al.(2013)
Sox10_2
0.423 0.348
Sox10
M03537_2.00
Mus musculus
ATGAATTDCAGTCAT

ATGACTGHAATTCAT
SELEX
Jolma et al.(2013)
Sox10_3
0.423 0.348
SOX10
M05759_2.00
Homo sapiens
AACAATRNNNYATTGTT

AACAATRNNNYATTGTT
SELEX
Yin et al.(2017)
SOX10_eDBD_HT-SELEX
0.423 0.348
SOX10
M05761_2.00
Homo sapiens
NACAATRVNNBYATTGTN

NACAATRVNNBYATTGTN
SELEX
Yin et al.(2017)
SOX10_FL_HT-SELEX
0.423 0.348
SOX10
M05891_2.00
Homo sapiens
BBCWWTGTTH

DAACAWWGVV
SMiLE-seq
Isakova et al.(2017)
SOX10
0.423 0.348
SOX10
M08165_2.00
Homo sapiens
NNVACAAAGVN

NBCTTTGTBNN
ChIP-seq
Mathelier et al.(2014)
MA0442.2
0.423 0.348
SOX10
M09387_2.00
Homo sapiens
VAADRVVNBCWTTGTN

NACAAWGVNBBYHTTB
Misc
Kulakovskiy et al.(2013)
SOX10_HUMAN.H11MO.0.B
0.423 0.348
Sox10
M09403_2.00
Mus musculus
VAADRVVNBCWTTGTN

NACAAWGVNBBYHTTB
Misc
Kulakovskiy et al.(2013)
SOX10_MOUSE.H11MO.0.B
0.423 0.348
SOX10
M11296_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q3
0.423 0.348
SOX10
M11297_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q6_01
0.423 0.348
SOX10
M11298_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q6
0.423 0.348
SOX10
M05760_2.00
Homo sapiens
AACAATRSNSYATTGTT

AACAATRSNSYATTGTT
SELEX
Yin et al.(2017)
SOX10_eDBD_Methyl-HT-SELEX
0.423 0.348
SOX10
M05762_2.00
Homo sapiens
NACAATRVNNBYATTGTN

NACAATRVNNBYATTGTN
SELEX
Yin et al.(2017)
SOX10_FL_Methyl-HT-SELEX
0.423 0.348
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t07996-RA Sox 231 299

Links

Other Sox family TFs
Other Litomosoides sigmodontis TFs

645 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_02509 Capronia coronata A1O1_02509 N 0.000
A1O3_00914 Capronia epimyces A1O3_00914 N 0.000
A1O3_02841 Capronia epimyces A1O3_02841 I 0.000
A1O5_01498 Cladophialophora psammophila A1O5_01498 N 0.000
A1O7_04026 Cladophialophora yegresii A1O7_04026 I 0.000
A1O7_08287 Cladophialophora yegresii A1O7_08287 N 0.000
ARB_01120 Arthroderma benhamiae ARB_01120 N 0.000
BDDG_08162 Blastomyces dermatitidis BDDG_08162 N 0.000
ACLA_007650 Aspergillus clavatus CADACLAG00000450 N 0.000
CADAFLAG00000474 Aspergillus flavus CADAFLAG00000474 N 0.000
AFUA_7G05960 Aspergillus fumigatus CADAFUAG00009660 N 0.000
CADANGAG00005435 Aspergillus niger CADANGAG00005435 N 0.000
CADAORAG00002457 Aspergillus oryzae CADAORAG00002457 N 0.000
NFIA_027200 Neosartorya fischeri CADNFIAG00002534 N 0.000
CIMG_08163 Coccidioides immitis CIMG_08163 N 0.000
CPC735_021860 Coccidioides posadasii CPC735_021860 N 0.000
fgenesh1_pm.00771_#_78 Aspergillus carbonarius fgenesh1_pm.00771_#_78 N 0.000
G647_04666 Cladophialophora carrionii G647_04666 I 0.000
G647_07244 Cladophialophora carrionii G647_07244 N 0.000
H101_04104 Trichophyton interdigitale H101_04104 N 0.000
H102_03320 Trichophyton rubrum H102_03320 N 0.000
H105_03339 Trichophyton soudanense H105_03339 N 0.000
HCBG_04319 Histoplasma capsulatum HCBG_04319 N 0.000
HMPREF1120_02238 Exophiala dermatitidis HMPREF1120_02238 N 0.000
HMPREF1120_06404 Exophiala dermatitidis HMPREF1120_06404 N 0.000
HMPREF1541_03654 Cyphellophora europaea HMPREF1541_03654 N 0.000
MGYG_07575 Microsporum gypseum MGYG_07575 N 0.000
Pc20g01360 Penicillium chrysogenum Pc20g01360 N 0.000
PCH_Pc20g01360 Penicillium rubens PCH_Pc20g01360 N 0.000
PDE_02184 Penicillium oxalicum PDE_02184 N 0.000
PEX1_025390 Penicillium expansum PEX1_025390 N 0.000
PITC_029080 Penicillium italicum PITC_029080 N 0.000
PMAA_049200 Penicillium marneffei PMAA_049200 N 0.000
PMAA_049200 Talaromyces marneffei PMAA_049200 N 0.000
PV04_05279 Capronia semiimmersa PV04_05279 I 0.000
PV04_08823 Capronia semiimmersa PV04_08823 N 0.000
PV05_00997 Exophiala xenobiotica PV05_00997 N 0.000
PV06_09822 Exophiala oligosperma PV06_09822 N 0.000
PV07_00882 Cladophialophora immunda PV07_00882 N 0.000
PV08_08880 Exophiala spinifera PV08_08880 N 0.000
PV10_00514 Exophiala mesophila PV10_00514 I 0.000
PV10_04925 Exophiala mesophila PV10_04925 N 0.000
PV11_02484 Exophiala sideris PV11_02484 N 0.000
PVAR5_4548 Byssochlamys spectabilis PVAR5_4548 N 0.000
TEQG_07260 Trichophyton equinum TEQG_07260 N 0.000
TESG_03991 Trichophyton tonsurans TESG_03991 N 0.000
TRV_02239 Trichophyton verrucosum TRV_02239 N 0.000
TSTA_039140 Talaromyces stipitatus TSTA_039140 N 0.000
U727_00431380241 Penicillium solitum U727_00431380241 N 0.000
Z517_05164 Fonsecaea pedrosoi Z517_05164 N 0.000
Z518_10184 Rhinocladiella mackenziei Z518_10184 I 0.000
Z518_10852 Rhinocladiella mackenziei Z518_10852 N 0.000
Z519_01916 Cladophialophora bantiana Z519_01916 N 0.000