RSKR_0000077800 (Rhabditophanes kr3021)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 RSKR_0000077800 T336851_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Cic
M00195_2.00
Mus musculus
NNTGCTGABN

NVTCAGCANN
PBM
Badis et al.(2009)
Cic_3454
0.643 0.754
gei-3
M00711_2.00
Caenorhabditis elegans
NWNWMWDN

NHWKWNWN
PBM
Narasimhan et al.(2015)
pTH10038
0.643 0.739
cic
M06452_2.00
Drosophila melanogaster
YYCATTSA

TSAATGRR
B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386
0.642 0.681
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN

NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.428 0.290
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS

SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.428 0.290
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN

NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.428 0.290
ROX1
M11346_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.428 0.290
ROX1
M11347_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.428 0.290
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000077800.1 Sox 213 281

Links

Other Sox family TFs
Other Rhabditophanes kr3021 TFs

362 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_02377 Capronia coronata A1O1_02377 N 0.000
A1O5_07132 Cladophialophora psammophila A1O5_07132 N 0.000
A1O7_04910 Cladophialophora yegresii A1O7_04910 N 0.000
A1O9_12373 Exophiala aquamarina A1O9_12373 N 0.000
ACRE_076190 Acremonium chrysogenum ACRE_076190 N 0.000
BBA_06576 Beauveria bassiana BBA_06576 N 0.000
Bcin04g03610 Botrytis cinerea Bcin04g03610 N 0.000
BGHDH14_bgh05226 Blumeria graminis BGHDH14_bgh05226 N 0.000
CIMG_06601 Coccidioides immitis CIMG_06601 N 0.000
CMQ_7680 Grosmannia clavigera CMQ_7680 N 0.000
CPC735_030630 Coccidioides posadasii CPC735_030630 N 0.000
EPUS_03856 Endocarpon pusillum EPUS_03856 N 0.000
G647_03750 Cladophialophora carrionii G647_03750 N 0.000
GMDG_03560 Pseudogymnoascus destructans GMDG_03560 N 0.000
H101_05244 Trichophyton interdigitale H101_05244 N 0.000
H102_01311 Trichophyton rubrum H102_01311 N 0.000
H105_01327 Trichophyton soudanense H105_01327 N 0.000
HCBG_06549 Histoplasma capsulatum HCBG_06549 N 0.000
M7I_6904 Glarea lozoyensis M7I_6904 N 0.000
MAC_06055 Metarhizium acridum MAC_06055 N 0.000
MAJ_09186 Metarhizium majus MAJ_09186 N 0.000
MAM_06483 Metarhizium album MAM_06483 N 0.000
MANI_009173 Metarhizium anisopliae MANI_009173 N 0.000
MBM_05307 Marssonina brunnea MBM_05307 N 0.000
MBR_00701 Metarhizium brunneum MBR_00701 N 0.000
MGU_00835 Metarhizium guizhouense MGU_00835 N 0.000
MGYG_04271 Microsporum gypseum MGYG_04271 N 0.000
OIDMADRAFT_62029 Oidiodendron maius OIDMADRAFT_62029 N 0.000
PAAG_04257 Paracoccidioides sp lutzii PAAG_04257 N 0.000
PABG_04038 Paracoccidioides brasiliensis PABG_04038 N 0.000
Pc22g13920 Penicillium chrysogenum Pc22g13920 N 0.000
PCH_Pc22g13920 Penicillium rubens PCH_Pc22g13920 N 0.000
PDIP_53700 Penicillium digitatum PDIP_53700 N 0.000
PEX1_088910 Penicillium expansum PEX1_088910 N 0.000
PITC_015930 Penicillium italicum PITC_015930 N 0.000
PMAA_083210 Penicillium marneffei PMAA_083210 N 0.000
PMAA_083210 Talaromyces marneffei PMAA_083210 N 0.000
PV04_04302 Capronia semiimmersa PV04_04302 N 0.000
PV05_06244 Exophiala xenobiotica PV05_06244 N 0.000
PV06_01730 Exophiala oligosperma PV06_01730 N 0.000
PV07_05162 Cladophialophora immunda PV07_05162 N 0.000
PV10_06622 Exophiala mesophila PV10_06622 N 0.000
PVAR5_6035 Byssochlamys spectabilis PVAR5_6035 N 0.000
SPBR_02434 Sporothrix brasiliensis SPBR_02434 N 0.000
SS1G_03796 Sclerotinia sclerotiorum SS1G_03796 N 0.000
TEQG_03505 Trichophyton equinum TEQG_03505 N 0.000
TESG_00611 Trichophyton tonsurans TESG_00611 N 0.000
U727_00430291271 Penicillium solitum U727_00430291271 N 0.000
UREG_03844 Uncinocarpus reesii UREG_03844 N 0.000
V499_07958 Pseudogymnoascus pannorum V499_07958 N 0.000
X797_009049 Metarhizium robertsii X797_009049 N 0.000
Z517_06288 Fonsecaea pedrosoi Z517_06288 N 0.000
Z519_06369 Cladophialophora bantiana Z519_06369 N 0.000