CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold1445-EXSNAP2012.1
(
Pristionchus exspectatus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
scaffold1445-EXSNAP2012.1
T336897_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pop-1
M00712_2.00
Caenorhabditis elegans
NNHDWVNNNN
NNNNBWHDNN
PBM
Narasimhan et al.(2015)
pTH9135
0.508
0.609
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold1445-EXSNAP2012.1
Sox
135
205
IKKPKNAYFWFMDENRKVLMNEEEWKDKQSADLNKELGKRWHDMKEEDKRPYFEMAAKDKEDHAKKYPNWS
Links
Other
Sox
family TFs
Other
Pristionchus exspectatus
TFs
118 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy