snap_masked-nMf.1.1.scaf06721-processed-gene-0.5 (Meloidogyne floridensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 snap_masked-nMf.1.1.scaf06721-processed-gene-0.5 T336976_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
snap_masked-nMf.1.1.scaf06721-processed-gene-0.5-mRNA-1 Sox 55 117

Links

Other Sox family TFs
Other Meloidogyne floridensis TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CBG11867 Caenorhabditis briggsae CBG11867 N 0.433
HCOI01215700 Haemonchus contortus HCOI01215700 N 0.431
L889_g13125 Steinernema feltiae L889_g13125 N 0.489
L898_g14011 Steinernema monticolum L898_g14011 N 0.423
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N 0.515
NECAME_01599 Necator americanus NECAME_01599 N 0.431
OESDEN_01314 Oesophagostomum dentatum OESDEN_01314 N 0.431
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N 0.468
RSKR_0000607700 Rhabditophanes kr3021 RSKR_0000607700 N 0.477
scaffold517-EXSNAP2012.7 Pristionchus exspectatus scaffold517-EXSNAP2012.7 N 0.458
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N 0.468
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N 0.474
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N 0.468
SVUK_0000363901 Strongylus vulgaris SVUK_0000363901 N 0.431
HCOI00076900 Haemonchus contortus HCOI00076900 N 0.431
DICVIV_00270 Dictyocaulus viviparus DICVIV_00270 N 0.431
CBN07735 Caenorhabditis brenneri CBN07735 N 0.461
CBN31697 Caenorhabditis brenneri CBN31697 N 0.461
CJA03316 Caenorhabditis japonica CJA03316 N 0.421
CJA30740 Caenorhabditis japonica CJA30740 N 0.421
CRE14258 Caenorhabditis remanei CRE14258 N 0.460
pbrm-1 Caenorhabditis elegans WBGene00007042 N 0.470
Minc06622 Meloidogyne incognita Minc06622 N 0.515
ACAC_0000973801 Angiostrongylus cantonensis ACAC_0000973801 N 0.431
ANCCAN_09463 Ancylostoma caninum ANCCAN_09463 N 0.431
ANCCEY_15064 Ancylostoma ceylanicum ANCCEY_15064 N 0.431
ANCCEY_15918 Ancylostoma ceylanicum ANCCEY_15918 N 0.431
ANCDUO_06783 Ancylostoma duodenale ANCDUO_06783 N 0.431
augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1 N 0.513
TELCIR_16246 Teladorsagia circumcincta TELCIR_16246 N 0.431