CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CpipJ_CPIJ004922
(
Culex pipiens
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00907 (T-box)
IPR001699
CpipJ_CPIJ004922
T339222_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Doc2
M03992_2.00
Drosophila melanogaster
DRGGTGTBAN
NTVACACCYH
SELEX
Nitta et al.(2015)
Doc2_1
0.820
0.779
Doc2
M03993_2.00
Drosophila melanogaster
NAGGTGTBAN
NTVACACCTN
SELEX
Nitta et al.(2015)
Doc2_2
0.820
0.779
Doc2
M06454_2.00
Drosophila melanogaster
ARGYGTGAA
TTCACRCYT
B1H
Zhu et al.(2011)
Doc2_SANGER_5_FBgn0035956
0.820
0.779
Doc3
M03990_2.00
Drosophila melanogaster
NRGGTGTBAD
HTVACACCYN
SELEX
Nitta et al.(2015)
Doc3_1
0.781
0.757
Doc3
M03991_2.00
Drosophila melanogaster
DAGGTGTBAN
NTVACACCTH
SELEX
Nitta et al.(2015)
Doc3_2
0.781
0.757
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CpipJ_CPIJ004922-RA
T-box
50
230
VKLQNRDMWSDFHRIGTEMIITKSGRRMFPSMRLSFNGLEADENYCVLIEMVPISDCRFKFSGSQWVPAGGAEPQSPQRFYQHPDSPALGSHWTSQPVNFNKVKLTNNTLDSNGHIVLTSMHKYQPRIHVIKASEREHFAWAPQSSFTFPETEFVAVTAYQNDRITKLKIDNNPFAKGFRE
Links
Other
T-box
family TFs
Other
Culex pipiens
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy