TBX4 (Bos taurus)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSBTAG00000009968 T339649_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbx4
M00831_2.00
Mus musculus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2013)
pTH3973
0.920 1.000
TBX4
M03558_2.00
Homo sapiens
AGGTGTBA

TVACACCT
SELEX
Jolma et al.(2013)
TBX4_1
0.920 1.000
TBX4
M03559_2.00
Homo sapiens
AGGTGTBANWWNTVACACBT

AVGTGTBANWWNTVACACCT
SELEX
Jolma et al.(2013)
TBX4_2
0.920 1.000
Tbx5
M00833_2.00
Mus musculus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2013)
pTH3775
0.899 0.934
TBX5
M03552_2.00
Homo sapiens
AGGTGTBA

TVACACCT
SELEX
Jolma et al.(2013)
TBX5_1
0.899 0.934
TBX5
M03553_2.00
Homo sapiens
AGGTGTKANWWNTVACACCT

AGGTGTBANWWNTMACACCT
SELEX
Jolma et al.(2013)
TBX5_2
0.899 0.934
Tbx5
M09649_2.00
Mus musculus
AGGTGHBA

TVDCACCT
Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529
0.899 0.934
TBX5
M11374_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_01
0.899 0.934
TBX5
M11375_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_02
0.899 0.934
Tbx5
M11387_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_05
0.899 0.934
TBX5
M11376_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q2
0.899 0.934
TBX5
M11377_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q5
0.899 0.934
XP_008203914.1
M01029_2.00
Nasonia vitripennis
AGGTGTBA

TVACACCT
PBM
SebePedros et al.(2013)
pTH9336
0.790 0.621
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN

NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.785 0.654
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB

VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.785 0.654
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN

NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.785 0.654
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN

NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.785 0.654
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH

DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.785 0.654
TBX2
M11381_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.785 0.654
TBX2
M11382_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.785 0.654
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN

NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.785 0.654
Tbx3
M00834_2.00
Mus musculus
NHNDCACNHN

NDNGTGHNDN
PBM
Weirauch et al.(2013)
pTH3998
0.783 0.637
TBX3
M05801_2.00
Homo sapiens
NDSGTGTBRN

NYVACACSHN
SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX
0.783 0.637
TBX3
M09426_2.00
Homo sapiens
DVDGGTGBNAR

YTNVCACCHBH
Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C
0.783 0.637
Tbx3
M09429_2.00
Mus musculus
RRGGTGBBR

YVVCACCYY
Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B
0.783 0.637
TBX3
M05802_2.00
Homo sapiens
DAGGTGTKAN

NTMACACCTH
SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX
0.783 0.637
estExt_fgenesh2_pg.C_1570024
M01030_2.00
Branchiostoma floridae
NHNDCACNHN

NDNGTGHNDN
PBM
SebePedros et al.(2013)
pTH9244
0.773 0.676
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.773 0.670
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN

NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.752 0.637
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN

NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.752 0.637
Tbx20
M00835_2.00
Mus musculus
NRRGTGTBAN

NTVACACYYN
PBM
Weirauch et al.(2013)
pTH3777
0.741 0.610
TBX20
M03565_2.00
Homo sapiens
AGGTGTKARVGYGTGA

TCACRCBYTMACACCT
SELEX
Jolma et al.(2013)
TBX20_1
0.741 0.610
TBX20
M03566_2.00
Homo sapiens
AGGTGTGAAWDTSACACBT

AVGTGTSAHWTTCACACCT
SELEX
Jolma et al.(2013)
TBX20_2
0.741 0.610
TBX20
M03567_2.00
Homo sapiens
NNNDAGGTGTGAAND

HNTTCACACCTHNNN
SELEX
Jolma et al.(2013)
TBX20_3
0.741 0.610
TBX20
M03568_2.00
Homo sapiens
DAGGTGTGAWR

YWTCACACCTH
SELEX
Jolma et al.(2013)
TBX20_4
0.741 0.610
TBX20
M03569_2.00
Homo sapiens
AGGTGTKANGKTGTSA

TSACAMCNTMACACCT
SELEX
Jolma et al.(2013)
TBX20_5
0.741 0.610
TBX20
M05813_2.00
Homo sapiens
DAGGTGTKARSGTGTGAA

TTCACACSYTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1
0.741 0.610
TBX20
M05814_2.00
Homo sapiens
NAGGTGTGAAWTTCACACCTN

NAGGTGTGAAWTTCACACCTN
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2
0.741 0.610
TBX20
M05817_2.00
Homo sapiens
DRRGTGTBADVGYGTBAN

NTVACRCBHTVACACYYH
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1
0.741 0.610
TBX20
M05818_2.00
Homo sapiens
WTCACACYTAGGTGTKAM

KTMACACCTARGTGTGAW
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2
0.741 0.610
Tbx20
M09430_2.00
Mus musculus
NDSTGNTGACAGSN

NSCTGTCANCASHN
Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C
0.741 0.610
Tbx20
M09650_2.00
Mus musculus
SCTGTCADCASN

NSTGHTGACAGS
Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636
0.741 0.610
TBX20
M11385_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX20_05
0.741 0.610
TBX20
M05815_2.00
Homo sapiens
DAGGTGTKAASGYGTKAA

TTMACRCSTTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1
0.741 0.610
TBX20
M05816_2.00
Homo sapiens
DASGTGTGAWWWTCACACCTH

DAGGTGTGAWWWTCACACSTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2
0.741 0.610
TBX20
M05819_2.00
Homo sapiens
DRGGYGTBARVGYGTKAN

NTMACRCBYTVACRCCYH
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1
0.741 0.610
TBX20
M05820_2.00
Homo sapiens
TTMACRCCTAVGTGTGAA

TTCACACBTAGGYGTKAA
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2
0.741 0.610
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000013147 T-box 77 259

Links

Other T-box family TFs
Other Bos taurus TFs

339 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_013_00134 Aquilegia coerulea Aquca_013_00134 N 0.000
Aquca_037_00095 Aquilegia coerulea Aquca_037_00095 N 0.000
ETC3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002892 N 0.000
TCL1 Arabidopsis lyrata fgenesh2_kg.4__1015__AT2G30432.1 N 0.000
TCL2 Arabidopsis lyrata scaffold_401531.1 N 0.000
ETC1 Arabidopsis lyrata Al_scaffold_0001_92 N 0.000
scaffold_401530.1 Arabidopsis lyrata scaffold_401530.1 N 0.000
TRY Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001350 N 0.000
CPC Arabidopsis lyrata Al_scaffold_0005_3105 N 0.000
Al_scaffold_0136_3 Arabidopsis lyrata Al_scaffold_0136_3 N 0.000
ETC1 Arabidopsis thaliana AT1G01380 N 0.000
ETC3 Arabidopsis thaliana AT4G01060 N 0.000
TCL2 Arabidopsis thaliana AT2G30424 N 0.000
TCL1 Arabidopsis thaliana AT2G30432 N 0.000
CPC Arabidopsis thaliana AT2G46410 N 0.000
TRY Arabidopsis thaliana AT5G53200 N 0.000
Bostr.24513s0195 Boechera stricta Bostr.24513s0195 N 0.000
Bostr.25993s0128 Boechera stricta Bostr.25993s0128 N 0.000
Bostr.26833s0960 Boechera stricta Bostr.26833s0960 N 0.000
Bostr.7365s0058 Boechera stricta Bostr.7365s0058 N 0.000
Bostr.5325s0057 Boechera stricta Bostr.5325s0057 N 0.000
Bostr.24513s0196 Boechera stricta Bostr.24513s0196 N 0.000
Bostr.13158s0169 Boechera stricta Bostr.13158s0169 N 0.000
Bo2g046050 Brassica oleracea Bo2g046050 N 0.000
Bo2g098940 Brassica oleracea Bo2g098940 N 0.000
Bo3g022870 Brassica oleracea Bo3g022870 N 0.000
Bo3g024610 Brassica oleracea Bo3g024610 N 0.000
Bo3g039260 Brassica oleracea Bo3g039260 N 0.000
Bo3g054440 Brassica oleracea Bo3g054440 N 0.000
Bo4g009260 Brassica oleracea Bo4g009260 N 0.000
Bo4g197120 Brassica oleracea Bo4g197120 N 0.000
Bo9g110930 Brassica oleracea Bo9g110930 N 0.000
Bra000941 Brassica rapa Bra000941 N 0.000
Bra022637 Brassica rapa Bra022637 N 0.000
Bra008539 Brassica rapa Bra008539 N 0.000
Bra004539 Brassica rapa Bra004539 N 0.000
Bra026297 Brassica rapa Bra026297 N 0.000
Bra039283 Brassica rapa Bra039283 N 0.000
Cagra.1968s0081 Capsella grandiflora Cagra.1968s0081 N 0.000
Cagra.1372s0017 Capsella grandiflora Cagra.1372s0017 N 0.000
Cagra.0567s0009 Capsella grandiflora Cagra.0567s0009 N 0.000
Cagra.0483s0079 Capsella grandiflora Cagra.0483s0079 N 0.000
Cagra.0084s0067 Capsella grandiflora Cagra.0084s0067 N 0.000
Cagra.0050s0058 Capsella grandiflora Cagra.0050s0058 N 0.000
Carubv10024393m.g Capsella rubella Carubv10024393m.g N 0.000
Carubv10025583m.g Capsella rubella Carubv10025583m.g N 0.000
Carubv10024964m.g Capsella rubella Carubv10024964m.g N 0.000
Carubv10024406m.g Capsella rubella Carubv10024406m.g N 0.000
Carubv10018233m.g Capsella rubella Carubv10018233m.g N 0.000
Carubv10011382m.g Capsella rubella Carubv10011382m.g N 0.000
Carubv10003403m.g Capsella rubella Carubv10003403m.g N 0.000
Carubv10027412m.g Capsella rubella Carubv10027412m.g N 0.000
evm.TU.contig_29502 Carica papaya evm.TU.contig_29502 N 0.000
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N 0.000
Ca_15029 Cicer arietinum Ca_15029 N 0.000
Cla011563 Citrullus lanatus Cla011563 N 0.000
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N 0.000
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N 0.000
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N 0.000
Cucsa.201970 Cucumis sativus Cucsa.201970 N 0.000
Eucgr.D02360 Eucalyptus grandis Eucgr.D02360 N 0.000
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N 0.000
Eucgr.E00851 Eucalyptus grandis Eucgr.E00851 N 0.000
Eucgr.K00803 Eucalyptus grandis Eucgr.K00803 N 0.000
Thhalv10015741m.g Eutrema salsugineum Thhalv10015741m.g N 0.000
Thhalv10029104m.g Eutrema salsugineum Thhalv10029104m.g N 0.000
Thhalv10001695m.g Eutrema salsugineum Thhalv10001695m.g N 0.000
gene35171-v1.0-hybrid Fragaria vesca gene35171-v1.0-hybrid N 0.000
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N 0.000
GLYMA01G43435 Glycine max GLYMA01G43435 N 0.000
GLYMA11G02061 Glycine max GLYMA11G02061 N 0.000
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N 0.000
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N 0.000
Lus10014933.g Linum usitatissimum Lus10014933.g N 0.000
Lus10038822.g Linum usitatissimum Lus10038822.g N 0.000
Lus10005949.g Linum usitatissimum Lus10005949.g N 0.000
MDP0000547418 Malus domestica MDP0000547418 N 0.000
MDP0000141474 Malus domestica MDP0000141474 N 0.000
MDP0000718806 Malus domestica MDP0000718806 N 0.000
cassava10382.m1 Manihot esculenta cassava10382.m1 N 0.000
cassava46504.m1 Manihot esculenta cassava46504.m1 N 0.000
cassava32987.m1 Manihot esculenta cassava32987.m1 N 0.000
MTR_5g009460 Medicago truncatula MTR_5g009460 N 0.000
GSMUA_Achr3G25090_001 Musa acuminata GSMUA_Achr3G25090_001 N 0.000
GSMUA_AchrUn_randomG19730_001 Musa acuminata GSMUA_AchrUn_randomG19730_001 N 0.000
GSMUA_Achr8G19880_001 Musa acuminata GSMUA_Achr8G19880_001 N 0.000
GSMUA_Achr1G05080_001 Musa acuminata GSMUA_Achr1G05080_001 N 0.000
GSMUA_Achr10G09220_001 Musa acuminata GSMUA_Achr10G09220_001 N 0.000
PDK_20s1335581g001 Phoenix dactylifera PDK_20s1335581g001 N 0.000
PDK_20s1307674g001 Phoenix dactylifera PDK_20s1307674g001 N 0.000
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N 0.000
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N 0.000
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N 0.000
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N 0.000
Pm019781 Prunus mume Pm019781 N 0.000
Pm018400 Prunus mume Pm018400 N 0.000
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N 0.000
PRUPE_ppa024794mg Prunus persica PRUPE_ppa024794mg N 0.000
30169.m006531 Ricinus communis 30169.m006531 N 0.000
29742.m001447 Ricinus communis 29742.m001447 N 0.000
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N 0.000
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N 0.000
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N 0.000
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N 0.000
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N 0.000
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N 0.000
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N 0.000
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N 0.000
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N 0.000
TCM_016428 Theobroma cacao TCM_016428 N 0.000
TCM_015351 Theobroma cacao TCM_015351 N 0.000
TCM_005177 Theobroma cacao TCM_005177 N 0.000
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N 0.000
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N 0.000
VIT_10s0116g01760 Vitis vinifera VIT_10s0116g01760 N 0.000