brachyury (Ciona intestinalis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSCING00000000810 T339685_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
T
M05809_2.00 		Homo sapiens
NANGTGYGAHWWNTVRCACCTN
NAGGTGYBANWWDTCRCACNTN		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_1 		0.784 0.710
T
M05810_2.00 		Homo sapiens
DTCRCAYVTABGTGYGAH
DTCRCACVTABRTGYGAH		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_2 		0.784 0.710
T
M09427_2.00 		Homo sapiens
BYNVCANNNVDGTGWKARDN
NHYTMWCACHBNNNTGBNRV		 Misc
Kulakovskiy et al.(2013)
BRAC_HUMAN.H11MO.0.A 		0.784 0.710
T
M09431_2.00 		Mus musculus
VVNRAWTTSACASNYHDVTGBNMAN
NTKNVCABHDRNSTGTSAAWTYNBB		 Misc
Kulakovskiy et al.(2013)
BRAC_MOUSE.H11MO.0.B 		0.784 0.710
T
M09651_2.00 		Mus musculus
NYTVDCASNNNNSTGHBARNN
NNYTVDCASNNNNSTGHBARN		 Misc
Heinz et al.(2010)
Mesoendoderm-Brachyury_GSE54963 		0.784 0.710
T
M11384_2.00 		Homo sapiens
MKHBTSACACSTAGGTGTGAAATK
MATTTCACACCTASGTGTSAVDMK		 Transfac
Matys et al.(2006)
V$BRACH_01 		0.784 0.710
T
M05811_2.00 		Homo sapiens
NABGTGYGAHWWNTVRCACSTN
NASGTGYBANWWDTCRCACVTN		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_1 		0.784 0.710
T
M05812_2.00 		Homo sapiens
DTMRCAYVTABGTGYKAH
DTMRCACVTABRTGYKAH		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_2 		0.784 0.710
TBX19
M03562_2.00 		Homo sapiens
NDTVRCACVTANGTGYKANN
NNTMRCACNTABGTGYBAHN		 SELEX
Jolma et al.(2013)
TBX19_1 		0.778 0.682
TBX19
M05803_2.00 		Homo sapiens
NAGGTGYBAHWDTMRCACNTN
NANGTGYKAHWDTVRCACCTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_HT-SELEX 		0.778 0.682
TBX19
M05804_2.00 		Homo sapiens
NANGTGYKAHWDTVRCACSTN
NASGTGYBAHWDTMRCACNTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_Methyl-HT-SELEX 		0.778 0.682
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000001477 T-box 24 202

Links

Other T-box family TFs
Other Ciona intestinalis TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCSAVG00000002247 Ciona savignyi ENSCSAVG00000002247 I 0.892
Tbx19 Dipodomys ordii ENSDORG00000014860 I 0.792
ENSMPUG00000000522 Mustela putorius furo ENSMPUG00000000522 I 0.786
T Monodelphis domestica ENSMODG00000006318 I 0.784
T Mus musculus ENSMUSG00000062327 D 0.784
T Macaca mulatta ENSMMUG00000017047 I 0.784
T Gorilla gorilla ENSGGOG00000007693 I 0.784
T Equus caballus ENSECAG00000007994 I 0.784
T Homo sapiens ENSG00000164458 D 0.784
ENSNLEG00000011552 Nomascus leucogenys ENSNLEG00000011552 I 0.784
T Loxodonta africana ENSLAFG00000012505 I 0.784
ENSOARG00000004863 Ovis aries ENSOARG00000004863 I 0.784
ENSSTOG00000028238 Ictidomys tridecemlineatus ENSSTOG00000028238 I 0.784
T Tursiops truncatus ENSTTRG00000016665 I 0.784
Cmyd_10017804 Chelonia mydas Cmyd_10017804 I 0.784
ENSMMUP00000022430 Macaca fascicularis ENSMMUP00000022430 I 0.784
ENSSHAG00000018904 Sarcophilus harrisii ENSSHAG00000018904 I 0.784
T Rattus norvegicus ENSRNOG00000012229 I 0.784
T Otolemur garnettii ENSOGAG00000007863 I 0.784
ENSPANG00000005068 Papio anubis ENSPANG00000005068 I 0.784
ENSPPYG00000017163 Pongo abelii ENSPPYG00000017163 I 0.784
ENSPSIG00000005649 Pelodiscus sinensis ENSPSIG00000005649 I 0.784
ENSDNOG00000016178 Dasypus novemcinctus ENSDNOG00000016178 I 0.784
T Pan troglodytes ENSPTRG00000018789 I 0.784
T Callithrix jacchus ENSCJAG00000012508 I 0.784
T Cavia porcellus ENSCPOG00000001358 I 0.784
T Bos taurus ENSBTAG00000018681 I 0.784
ENSCSAG00000012200 Chlorocebus sabaeus ENSCSAG00000012200 I 0.784
T Ochotona princeps ENSOPRG00000003376 I 0.783
TriadG25521 Trichoplax adhaerens TriadG25521 I 0.782
ENSPSIG00000015509 Pelodiscus sinensis ENSPSIG00000015509 I 0.782
ENSOARG00000012617 Ovis aries ENSOARG00000012617 I 0.782
TBX19 Bos taurus ENSBTAG00000002952 I 0.782
ENSP00000356795-D1 Bos grunniens ENSP00000356795-D1 I 0.782
Cmyd_10020966 Chelonia mydas Cmyd_10020966 I 0.782
T Anolis carolinensis ENSACAG00000003467 I 0.780
T Canis familiaris ENSCAFG00000000807 I 0.780
Pvit_04554 Pogona vitticeps Pvit_04554 I 0.780
T Gallus gallus ENSGALG00000011489 I 0.780
T Ornithorhynchus anatinus ENSOANG00000012289 I 0.780
T Taeniopygia guttata ENSTGUG00000009448 I 0.780
Ogr19099 Ophisaurus gracilis Ogr19099 I 0.780
ENSSHAG00000018940 Sarcophilus harrisii ENSSHAG00000018940 I 0.778
TBX19 Anolis carolinensis ENSACAG00000010693 I 0.778
TBX19 Ochotona princeps ENSOPRG00000016564 I 0.778
TBX19 Pan troglodytes ENSPTRG00000001647 I 0.778
TBX19 Vicugna pacos ENSVPAG00000000446 I 0.778
Alligator_sinensis_CCG010779.1 Alligator sinensis Alligator_sinensis_CCG010779.1 I 0.778
Afo_R013116 Aptenodytes forsteri Afo_R013116 I 0.778
Brh_R012030 Buceros rhinoceros Brh_R012030 I 0.778
ENSP00000356795 Macaca fascicularis ENSP00000356795 I 0.778
Gfo_R000170 Geospiza fortis Gfo_R000170 I 0.778
Aan_R012309 Calypte anna Aan_R012309 I 0.778
Myotis_brandtii_TBX19_10024384 Myotis brandtii Myotis_brandtii_TBX19_10024384 I 0.778
ENSSTOG00000019913 Ictidomys tridecemlineatus ENSSTOG00000019913 I 0.778
TBX19 Taeniopygia guttata ENSTGUG00000013434 I 0.778
ENSAPLG00000010506 Anas platyrhynchos ENSAPLG00000010506 I 0.778
Pvit_02210 Pogona vitticeps Pvit_02210 I 0.778
TBX19 Sus scrofa ENSSSCG00000006299 I 0.778
ENSAMEG00000004326 Ailuropoda melanoleuca ENSAMEG00000004326 I 0.778
SFT2D2 Macaca mulatta ENSMMUG00000005283 I 0.778
TBX19 Loxodonta africana ENSLAFG00000011227 I 0.778
TBX19 Callithrix jacchus ENSCJAG00000016812 I 0.778
TBX19 Canis familiaris ENSCAFG00000015268 I 0.778
TBX19 Myotis lucifugus ENSMLUG00000011933 I 0.778
TBX19 Cavia porcellus ENSCPOG00000012456 I 0.778
TBX19 Gorilla gorilla ENSGGOG00000001338 I 0.778
TBX19 Gallus gallus ENSGALG00000015244 I 0.778
TBX19 Microcebus murinus ENSMICG00000007817 I 0.778
ENSNLEG00000014917 Nomascus leucogenys ENSNLEG00000014917 I 0.778
Tbx19 Mus musculus ENSMUSG00000026572 I 0.778
TBX19 Oryctolagus cuniculus ENSOCUG00000014555 I 0.778
TBX19 Equus caballus ENSECAG00000010186 I 0.778
ENSCSAG00000011055 Chlorocebus sabaeus ENSCSAG00000011055 I 0.778
ENSFALG00000005706 Ficedula albicollis ENSFALG00000005706 I 0.778
TBX19 Otolemur garnettii ENSOGAG00000004458 I 0.778
TBX19 Homo sapiens ENSG00000143178 D 0.778
TBX19 Felis catus ENSFCAG00000015047 I 0.778
t2 Xenopus tropicalis XB-GENE-5981736 I 0.774
estExt_gwp.C_650221 Branchiostoma floridae estExt_gwp.C_650221 I 0.770
estExt_GenewiseH_1.C_9340011 Branchiostoma floridae estExt_GenewiseH_1.C_9340011 I 0.770
TBX19 Choloepus hoffmanni ENSCHOG00000010387 I 0.766
tbxt.S Xenopus laevis XB-GENE-865212 I 0.764
estExt_gwp.C_9340008 Branchiostoma floridae estExt_gwp.C_9340008 I 0.764
1XBR_A Xenopus laevis 1XBR_A I 0.764
1XBR_B Xenopus laevis 1XBR_B I 0.764
estExt_fgenesh2_pg.C_650149 Branchiostoma floridae estExt_fgenesh2_pg.C_650149 I 0.764
tbxt.L Xenopus laevis XB-GENE-6255736 I 0.764
tbxt Xenopus tropicalis XB-GENE-478789 I 0.763
TBX19 Monodelphis domestica ENSMODG00000002921 I 0.763
Alligator_sinensis_CCG019781.1 Alligator sinensis Alligator_sinensis_CCG019781.1 I 0.762
ENSXMAG00000006226 Xiphophorus maculatus ENSXMAG00000006226 I 0.761
ENSPFOG00000006034 Poecilia formosa ENSPFOG00000006034 I 0.761
tb Danio rerio ENSDARG00000039806 I 0.759
ENSLACG00000015449 Latimeria chalumnae ENSLACG00000015449 I 0.758
ENSLOCG00000016526 Lepisosteus oculatus ENSLOCG00000016526 I 0.758
ENSXMAG00000011123 Xiphophorus maculatus ENSXMAG00000011123 I 0.758
tb Oryzias latipes ENSORLG00000011262 I 0.758
ENSPFOG00000016071 Poecilia formosa ENSPFOG00000016071 I 0.758
ENSONIG00000009906 Oreochromis niloticus ENSONIG00000009906 I 0.758
BGIBMGA000322 Bombyx mori BGIBMGA000322 I 0.756
MCINX002868 Melitaea cinxia MCINX002868 I 0.756
ENSLOCG00000010586 Lepisosteus oculatus ENSLOCG00000010586 I 0.756
NV14821 Nasonia vitripennis NV14821 I 0.754
Hsal_03707--XP_396427.2_APIME Harpegnathos saltator Hsal_03707--XP_396427.2_APIME I 0.754
PHUM392580 Pediculus humanus PHUM392580 I 0.752
ENSGMOG00000017391 Gadus morhua ENSGMOG00000017391 I 0.752
CLEC002870 Cimex lectularius CLEC002870 I 0.751
tbx19 Tetraodon nigroviridis ENSTNIG00000006586 I 0.751
ML174736a Mnemiopsis leidyi ML174736a I 0.751
RPRC001186 Rhodnius prolixus RPRC001186 I 0.751
TBX19 Dasypus novemcinctus ENSDNOG00000015810 I 0.751
t2.S Xenopus laevis XB-GENE-5981788 I 0.748
ENSONIG00000008985 Oreochromis niloticus ENSONIG00000008985 I 0.747
tbx19 Takifugu rubripes ENSTRUG00000005718 I 0.747
Cflo_04209--XP_396427.2_APIME Camponotus floridanus Cflo_04209--XP_396427.2_APIME I 0.746
AMIN008605 Anopheles minimus AMIN008605 I 0.744
AFUN010277 Anopheles funestus AFUN010277 I 0.744
AQUA010101 Anopheles quadriannulatus AQUA010101 I 0.744
ASIS006984 Anopheles sinensis ASIS006984 I 0.744
ASTEI05115 Anopheles stephensi ASTEI05115 I 0.744
AEPI011219 Anopheles epiroticus AEPI011219 I 0.744
ADIR001942 Anopheles dirus ADIR001942 I 0.744
AALB003755 Anopheles albimanus AALB003755 I 0.744
AARA000721 Anopheles arabiensis AARA000721 I 0.744
ACOM032190 Anopheles coluzzii ACOM032190 I 0.744
ACUA027826 Anopheles culicifacies ACUA027826 I 0.744
XP_002164912.1 Hydra magnipapillata XP_002164912.1 I 0.744
AGAP011927 Anopheles gambiae AGAP011927 I 0.744
CPIJ011372 Culex quinquefasciatus CPIJ011372 I 0.744
ADAC000433 Anopheles darlingi ADAC000433 I 0.744
CpipJ_CPIJ011372 Culex pipiens CpipJ_CPIJ011372 I 0.744
AAEL011926 Aedes aegypti AAEL011926 I 0.744
AMEC020399 Anopheles melas AMEC020399 I 0.743
GF25302 Drosophila ananassae FBgn0102294 I 0.741
GA20217 Drosophila pseudoobscura FBgn0080212 I 0.741
LCUP008716 Lucilia cuprina LCUP008716 I 0.741
MDOA012486 Musca domestica MDOA012486 I 0.741
GH14805 Drosophila grimshawi FBgn0122281 I 0.741
GI11508 Drosophila mojavensis FBgn0134268 I 0.741
GJ13700 Drosophila virilis FBgn0200921 I 0.741
GK25266 Drosophila willistoni FBgn0227225 I 0.741
GL25108 Drosophila persimilis FBgn0162695 I 0.741
ENSAMXG00000003991 Astyanax mexicanus ENSAMXG00000003991 I 0.740
TC014076 Tribolium castaneum TC014076 I 0.740
T Oryctolagus cuniculus ENSOCUG00000000660 I 0.739
SPU_013015 Strongylocentrotus purpuratus SPU_013015 N 0.736
tb Takifugu rubripes ENSTRUG00000011958 I 0.736