ta (Gasterosteus aculeatus)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSGACG00000007637 T339909_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
T
M05809_2.00
Homo sapiens
NANGTGYGAHWWNTVRCACCTN

NAGGTGYBANWWDTCRCACNTN
SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_1
0.801 0.875
T
M05810_2.00
Homo sapiens
DTCRCAYVTABGTGYGAH

DTCRCACVTABRTGYGAH
SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_2
0.801 0.875
T
M09427_2.00
Homo sapiens
BYNVCANNNVDGTGWKARDN

NHYTMWCACHBNNNTGBNRV
Misc
Kulakovskiy et al.(2013)
BRAC_HUMAN.H11MO.0.A
0.801 0.875
T
M11384_2.00
Homo sapiens
MKHBTSACACSTAGGTGTGAAATK

MATTTCACACCTASGTGTSAVDMK
Transfac
Matys et al.(2006)
V$BRACH_01
0.801 0.875
T
M05811_2.00
Homo sapiens
NABGTGYGAHWWNTVRCACSTN

NASGTGYBANWWDTCRCACVTN
SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_1
0.801 0.875
T
M05812_2.00
Homo sapiens
DTMRCAYVTABGTGYKAH

DTMRCACVTABRTGYKAH
SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_2
0.801 0.875
T
M09431_2.00
Mus musculus
VVNRAWTTSACASNYHDVTGBNMAN

NTKNVCABHDRNSTGTSAAWTYNBB
Misc
Kulakovskiy et al.(2013)
BRAC_MOUSE.H11MO.0.B
0.801 0.869
T
M09651_2.00
Mus musculus
NYTVDCASNNNNSTGHBARNN

NNYTVDCASNNNNSTGHBARN
Misc
Heinz et al.(2010)
Mesoendoderm-Brachyury_GSE54963
0.801 0.869
TBX19
M03562_2.00
Homo sapiens
NDTVRCACVTANGTGYKANN

NNTMRCACNTABGTGYBAHN
SELEX
Jolma et al.(2013)
TBX19_1
0.799 0.807
TBX19
M05803_2.00
Homo sapiens
NAGGTGYBAHWDTMRCACNTN

NANGTGYKAHWDTVRCACCTN
SELEX
Yin et al.(2017)
TBX19_eDBD_HT-SELEX
0.799 0.807
TBX19
M05804_2.00
Homo sapiens
NANGTGYKAHWDTVRCACSTN

NASGTGYBAHWDTMRCACNTN
SELEX
Yin et al.(2017)
TBX19_eDBD_Methyl-HT-SELEX
0.799 0.807
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000010151 T-box 45 220

Links

Other T-box family TFs
Other Gasterosteus aculeatus TFs

Invalid Input OrderBy

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action