ENSLACG00000016333 (Latimeria chalumnae)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSLACG00000016333 T339988_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbx1
M00832_2.00
Mus musculus
NRGTGTGAANN

NNTTCACACYN
PBM
Weirauch et al.(2013)
pTH3822
0.918 0.995
TBX1
M03570_2.00
Homo sapiens
ARGTGTKAAAWHARGTGTGA

TCACACYTDWTTTMACACYT
SELEX
Jolma et al.(2013)
TBX1_1
0.918 0.995
TBX1
M03571_2.00
Homo sapiens
AGGTGTGAWWTTCACACCT

AGGTGTGAAWWTCACACCT
SELEX
Jolma et al.(2013)
TBX1_2
0.918 0.995
TBX1
M03572_2.00
Homo sapiens
AGGTGTGA

TCACACCT
SELEX
Jolma et al.(2013)
TBX1_3
0.918 0.995
TBX1
M03573_2.00
Homo sapiens
YYTCACACMTYWRAGGTGTGAAA

TTTCACACCTYWRAKGTGTGARR
SELEX
Jolma et al.(2013)
TBX1_4
0.918 0.995
TBX1
M03574_2.00
Homo sapiens
YTCACACCTDKAGGTGTGAA

TTCACACCTMHAGGTGTGAR
SELEX
Jolma et al.(2013)
TBX1_5
0.918 0.995
TBX1
M05821_2.00
Homo sapiens
BDRGGTGTGARV

BYTCACACCYHV
SELEX
Yin et al.(2017)
TBX1_eDBD_HT-SELEX
0.918 0.995
Tbx1
M11386_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX1_07
0.918 0.995
TBX1
M05822_2.00
Homo sapiens
DNWGGTGTGARN

NYTCACACCWNH
SELEX
Yin et al.(2017)
TBX1_eDBD_Methyl-HT-SELEX
0.918 0.995
org-1
M03988_2.00
Drosophila melanogaster
DRGTGTBAD

HTVACACYH
SELEX
Nitta et al.(2015)
org-1_1
0.741 0.731
org-1
M03989_2.00
Drosophila melanogaster
TRACACYTARGTGTGA

TCACACYTARGTGTYA
SELEX
Nitta et al.(2015)
org-1_2
0.741 0.731
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000018551 T-box 105 290

Links

Other T-box family TFs
Other Latimeria chalumnae TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.000
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I 0.000
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.000
MYB64 Arabidopsis thaliana AT5G11050 N 0.000
Bostr.23997s0007 Boechera stricta Bostr.23997s0007 N 0.000
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.000
Bo3g018490 Brassica oleracea Bo3g018490 I 0.000
Bo2g028290 Brassica oleracea Bo2g028290 I 0.000
Bra020346 Brassica rapa Bra020346 I 0.000
Bra006744 Brassica rapa Bra006744 I 0.000
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.000
Cla008304 Citrullus lanatus Cla008304 N 0.000
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.000
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.000
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.000
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.000
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.000
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.000
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.000
GLYMA02G39070 Glycine max GLYMA02G39070 N 0.000
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.000
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.000
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.000
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.000
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.000
Lus10005864.g Linum usitatissimum Lus10005864.g I 0.000
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.000
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.000
MDP0000319656 Malus domestica MDP0000319656 I 0.000
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.000
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.000
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.000
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.000
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.000
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.000
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.000
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.000
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.000
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.000
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.000
Pm024743 Prunus mume Pm024743 I 0.000
Pm000541 Prunus mume Pm000541 I 0.000
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.000
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.000
29681.m001315 Ricinus communis 29681.m001315 N 0.000
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.000
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.000
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.000
TCM_041651 Theobroma cacao TCM_041651 N 0.000
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.000