CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSLOCG00000006550
(
Lepisosteus oculatus
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
ENSLOCG00000006550
T340013_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
estExt_fgenesh2_pg.C_1570024
M01030_2.00
Branchiostoma floridae
NHNDCACNHN
NDNGTGHNDN
PBM
SebePedros et al.(2013)
pTH9244
0.788
0.669
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.738
0.680
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN
NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.737
0.619
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN
NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.737
0.619
Tbx5
M00833_2.00
Mus musculus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2013)
pTH3775
0.736
0.608
TBX5
M03552_2.00
Homo sapiens
AGGTGTBA
TVACACCT
SELEX
Jolma et al.(2013)
TBX5_1
0.736
0.608
TBX5
M03553_2.00
Homo sapiens
AGGTGTKANWWNTVACACCT
AGGTGTBANWWNTMACACCT
SELEX
Jolma et al.(2013)
TBX5_2
0.736
0.608
Tbx5
M09649_2.00
Mus musculus
AGGTGHBA
TVDCACCT
Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529
0.736
0.608
TBX5
M11374_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_01
0.736
0.608
TBX5
M11375_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_02
0.736
0.608
Tbx5
M11387_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_05
0.736
0.608
TBX5
M11376_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q2
0.736
0.608
TBX5
M11377_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q5
0.736
0.608
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLOCP00000007916
T-box
32
212
MSLEDSDLWKSFHELGTEMIITKPGRRMFPHCKITLSGLLPYAKYIILVDMVPVDGFRYKWNKDRWEVAGKAEPQPPCRTYLHPDSPAPGSHWMKQPVSFLKLKLTNNTLDQHGHIILHSMHRYQPRFHVVQADDLFSVRWSVFQTFTFPETIFTAVTAYQNGKITKLKIDHNPFAKGFRE
Links
Other
T-box
family TFs
Other
Lepisosteus oculatus
TFs
130 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy