ENSPFOG00000017938 (Poecilia formosa)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSPFOG00000017938 T340339_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
EOMES
M03563_2.00
Homo sapiens
DAGGTGTGAWNNN

NNNWTCACACCTH
SELEX
Jolma et al.(2013)
EOMES_1
0.883 0.902
EOMES
M03564_2.00
Homo sapiens
TVACACNTNNNDRNGTGTGA

TCACACNYHNNNANGTGTBA
SELEX
Jolma et al.(2013)
EOMES_2
0.883 0.902
EOMES
M02752_2.00
Homo sapiens
AGGTGTGAW

WTCACACCT
SELEX
Jolma et al.(2010)
EOMES_monomer
0.883 0.902
EOMES
M05807_2.00
Homo sapiens
DAGGTGTGAN

NTCACACCTH
SELEX
Yin et al.(2017)
EOMES_eDBD_HT-SELEX
0.883 0.902
EOMES
M09647_2.00
Homo sapiens
ARGTGWKAAN

NTTMWCACYT
Misc
Heinz et al.(2010)
H9-Eomes_GSE26097
0.883 0.902
EOMES
M05808_2.00
Homo sapiens
NABGTGYKAH

DTMRCACVTN
SELEX
Yin et al.(2017)
EOMES_eDBD_Methyl-HT-SELEX
0.883 0.902
Eomes
M00215_2.00
Mus musculus
RDGTGYBANN

NNTVRCACHY
PBM
Badis et al.(2009)
Eomes_0921
0.883 0.896
Tbr1
M01028_2.00
Mus musculus
DTVRCAMNYH

DRNKTGYBAH
PBM
SebePedros et al.(2013)
pTH2659
0.863 0.847
TBR1
M03560_2.00
Homo sapiens
AGGTGTGAAN

NTTCACACCT
SELEX
Jolma et al.(2013)
TBR1_1
0.863 0.847
TBR1
M03561_2.00
Homo sapiens
RAGGTGTGAAH

DTTCACACCTY
SELEX
Jolma et al.(2013)
TBR1_2
0.863 0.847
Tbx21
M09428_2.00
Mus musculus
DNDDSTGWSDND

HNHSWCASHHNH
Misc
Kulakovskiy et al.(2013)
TBX21_MOUSE.H11MO.0.A
0.786 0.721
Tbx21
M09648_2.00
Mus musculus
ADGTGWSAHN

NDTSWCACHT
Misc
Heinz et al.(2010)
CD8-Tbet_GSE33802
0.786 0.721
TBX21
M03546_2.00
Homo sapiens
GGTGTGAHDTMACACY

RGTGTKAHDTCACACC
SELEX
Jolma et al.(2013)
TBX21_1
0.786 0.716
TBX21
M03547_2.00
Homo sapiens
DAGGTGTGAW

WTCACACCTH
SELEX
Jolma et al.(2013)
TBX21_2
0.786 0.716
TBX21
M03548_2.00
Homo sapiens
TMACACYTNNDAGGTGTGA

TCACACCTHNNARGTGTKA
SELEX
Jolma et al.(2013)
TBX21_3
0.786 0.716
TBX21
M03549_2.00
Homo sapiens
GGTGTGAWATCACACC

GGTGTGATWTCACACC
SELEX
Jolma et al.(2013)
TBX21_4
0.786 0.716
TBX21
M03550_2.00
Homo sapiens
DAGGTGTGAW

WTCACACCTH
SELEX
Jolma et al.(2013)
TBX21_5
0.786 0.716
TBX21
M03551_2.00
Homo sapiens
TSACACCWNMRAGGTGTGA

TCACACCTYKNWGGTGTSA
SELEX
Jolma et al.(2013)
TBX21_6
0.786 0.716
TBX21
M05793_2.00
Homo sapiens
DAGGTGTKAN

NTMACACCTH
SELEX
Yin et al.(2017)
TBX21_eDBD_HT-SELEX
0.786 0.716
TBX21
M09425_2.00
Homo sapiens
NDSDRGSTGWBRN

NYVWCASCYHSHN
Misc
Kulakovskiy et al.(2013)
TBX21_HUMAN.H11MO.0.A
0.786 0.716
TBX21
M05794_2.00
Homo sapiens
DASGTGTKAW

WTMACACSTH
SELEX
Yin et al.(2017)
TBX21_eDBD_Methyl-HT-SELEX
0.786 0.716
A0A075Q982_PATMI
M00734_2.00
Patiria miniata
NAGGTGTBAN

NTVACACCTN
PBM
Cheatle-Jarvela et al.(2014)
PmTbr
0.777 0.634
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.749 0.519
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPFOP00000018037 T-box 155 342

Links

Other T-box family TFs
Other Poecilia formosa TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29933.m001454 Ricinus communis 29933.m001454 N 0.000
cassava26894.m1 Manihot esculenta cassava26894.m1 N 0.000
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I 0.000
Ca_22597 Cicer arietinum Ca_22597 N 0.000
chr3.LjT47O18.40.nc Lotus japonicus chr3.LjT47O18.40.nc N 0.000
chr3.LjT47O18.60.nc Lotus japonicus chr3.LjT47O18.60.nc N 0.000
chr3.LjT47O18.70.nc Lotus japonicus chr3.LjT47O18.70.nc N 0.000
Ciclev10016303m.g Citrus clementina Ciclev10016303m.g I 0.000
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I 0.000
Eucgr.A01766 Eucalyptus grandis Eucgr.A01766 I 0.000
evm.TU.supercontig_27.156 Carica papaya evm.TU.supercontig_27.156 N 0.000
evm.TU.supercontig_34.62 Carica papaya evm.TU.supercontig_34.62 N 0.000
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N 0.000
gene30736-v1.0-hybrid Fragaria vesca gene30736-v1.0-hybrid N 0.000
GLYMA06G45520 Glycine max GLYMA06G45520 N 0.000
GLYMA06G45540 Glycine max GLYMA06G45540 N 0.000
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.000
GLYMA12G11330 Glycine max GLYMA12G11330 I 0.000
GLYMA12G11340 Glycine max GLYMA12G11340 N 0.000
GLYMA12G11390 Glycine max GLYMA12G11390 N 0.000
GLYMA12G11490 Glycine max GLYMA12G11490 N 0.000
GLYMA12G32530 Glycine max GLYMA12G32530 I 0.000
GLYMA12G32541 Glycine max GLYMA12G32541 N 0.000
GLYMA13G37903 Glycine max GLYMA13G37903 I 0.000
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I 0.000
Gorai.005G206800 Gossypium raimondii Gorai.005G206800 N 0.000
Gorai.010G148300 Gossypium raimondii Gorai.010G148300 N 0.000
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N 0.000
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I 0.000
GSMUA_Achr5G03920_001 Musa acuminata GSMUA_Achr5G03920_001 I 0.000
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I 0.000
Lus10018546.g Linum usitatissimum Lus10018546.g N 0.000
Lus10018547.g Linum usitatissimum Lus10018547.g N 0.000
Lus10031607.g Linum usitatissimum Lus10031607.g N 0.000
Lus10033738.g Linum usitatissimum Lus10033738.g N 0.000
Lus10039734.g Linum usitatissimum Lus10039734.g I 0.000
Lus10039735.g Linum usitatissimum Lus10039735.g I 0.000
Lus10039772.g Linum usitatissimum Lus10039772.g N 0.000
MDP0000131822 Malus domestica MDP0000131822 I 0.000
MDP0000155426 Malus domestica MDP0000155426 I 0.000
MDP0000289283 Malus domestica MDP0000289283 I 0.000
MDP0000407613 Malus domestica MDP0000407613 N 0.000
MTR_0008s0390 Medicago truncatula MTR_0008s0390 N 0.000
MTR_0008s0470 Medicago truncatula MTR_0008s0470 N 0.000
MTR_0251s0050 Medicago truncatula MTR_0251s0050 N 0.000
MTR_2g089420 Medicago truncatula MTR_2g089420 N 0.000
MTR_2g089450 Medicago truncatula MTR_2g089450 N 0.000
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I 0.000
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N 0.000
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N 0.000
PGSC0003DMG400015087 Solanum tuberosum PGSC0003DMG400015087 N 0.000
PGSC0003DMG401026177 Solanum tuberosum PGSC0003DMG401026177 I 0.000
PGSC0003DMG402026177 Solanum tuberosum PGSC0003DMG402026177 I 0.000
PK24260.1 Cannabis sativa PK24260.1 N 0.000
Pm009880 Prunus mume Pm009880 N 0.000
Pm015302 Prunus mume Pm015302 N 0.000
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I 0.000
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I 0.000
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N 0.000
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N 0.000
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N 0.000
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I 0.000
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I 0.000
Solyc03g093940.1 Solanum lycopersicum Solyc03g093940.1 N 0.000
Solyc07g053230.2 Solanum lycopersicum Solyc07g053230.2 I 0.000
Solyc07g053240.2 Solanum lycopersicum Solyc07g053240.2 I 0.000
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I 0.000
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N 0.000
TCM_007865 Theobroma cacao TCM_007865 I 0.000
TCM_030020 Theobroma cacao TCM_030020 I 0.000
VIT_00s0203g00170 Vitis vinifera VIT_00s0203g00170 N 0.000
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I 0.000
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.000