Tbx22 (Rattus norvegicus)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSRNOG00000002346 T340423_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
human homolog is mutated in patients with the X-linked cleft palate with ankyloglossia; may play a role in craniofacial development [RGD, Feb 2006]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TBX22
M11383_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX22_01
0.865 0.896
TBX18
M05797_2.00
Homo sapiens
DDAGGTGTGARV

BYTCACACCTHH
SELEX
Yin et al.(2017)
TBX18_eDBD_HT-SELEX
0.834 0.720
TBX18
M11380_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX18_01
0.834 0.720
TBX18
M05798_2.00
Homo sapiens
NDAGGYGTGAAN

NTTCACRCCTHN
SELEX
Yin et al.(2017)
TBX18_eDBD_Methyl-HT-SELEX
0.834 0.720
TBX15
M03554_2.00
Homo sapiens
AGGTGTGAAATTCACACCT

AGGTGTGAATTTCACACCT
SELEX
Jolma et al.(2013)
TBX15_1
0.833 0.709
TBX15
M03555_2.00
Homo sapiens
AGGTGTGA

TCACACCT
SELEX
Jolma et al.(2013)
TBX15_2
0.833 0.709
TBX15
M05795_2.00
Homo sapiens
NRSGTGTBAN

NTVACACSYN
SELEX
Yin et al.(2017)
TBX15_eDBD_HT-SELEX
0.833 0.709
TBX15
M11378_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX15_01
0.833 0.709
TBX15
M11379_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX15_02
0.833 0.709
TBX15
M05796_2.00
Homo sapiens
NDSGYGTBAN

NTVACRCSHN
SELEX
Yin et al.(2017)
TBX15_eDBD_Methyl-HT-SELEX
0.833 0.709
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000003190 T-box 92 281
ENSRNOP00000069154 T-box 78 267

Links

Other T-box family TFs
Other Rattus norvegicus TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
estExt_fgenesh1_pm.C_680840001 Phytophthora capsici estExt_fgenesh1_pm.C_680840001 N 0.000
estExt_Genewise1Plus.C_180162 Phytophthora capsici estExt_Genewise1Plus.C_180162 I 0.000
estExt_Genewise1Plus.C_2050016 Phytophthora capsici estExt_Genewise1Plus.C_2050016 I 0.000
F443_20671 Phytophthora parasitica F443_20671 I 0.000
F443_20674 Phytophthora parasitica F443_20674 N 0.000
F443_20702 Phytophthora parasitica F443_20702 I 0.000
fgenesh1_kg.C_scaffold_15000102 Phytophthora capsici fgenesh1_kg.C_scaffold_15000102 I 0.000
fgenesh_scip_prom.46568.9768 Phytophthora kernoviae fgenesh_scip_prom.46568.9768 N 0.000
HpaG810857 Hyaloperonospora arabidopsidis HpaG810857 I 0.000
maker-par_contig_2748-snap-gene-0.2 Pythium arrhenomanes maker-par_contig_2748-snap-gene-0.2 I 0.000
maker-pir_contig_516-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.3 N 0.000
maker-pir_contig_516-fgenesh-gene-0.8 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.8 N 0.000
maker-pir_contig_548-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_548-fgenesh-gene-0.3 I 0.000
maker-pir_contig_548-snap-gene-0.6 Pythium irregulare maker-pir_contig_548-snap-gene-0.6 I 0.000
maker-piw_contig_637-fgenesh-gene-0.5 Pythium iwayamai maker-piw_contig_637-fgenesh-gene-0.5 I 0.000
maker-piw_contig_637-snap-gene-0.12 Pythium iwayamai maker-piw_contig_637-snap-gene-0.12 N 0.000
maker-pve_contig_13-snap-gene-0.46 Pythium vexans maker-pve_contig_13-snap-gene-0.46 I 0.000
maker-pve_contig_734-snap-gene-0.9 Pythium vexans maker-pve_contig_734-snap-gene-0.9 I 0.000
Phyra78879 Phytophthora ramorum Phyra78879 N 0.000
Phyra80922 Phytophthora ramorum Phyra80922 N 0.000
Phyra80925 Phytophthora ramorum Phyra80925 N 0.000
Physo132965 Phytophthora sojae Physo132965 N 0.000
PITG_14400 Phytophthora infestans PITG_14400 I 0.000
PYU1_G002831 Pythium ultimum PYU1_G002831 N 0.000
PYU1_G002832 Pythium ultimum PYU1_G002832 N 0.000
PYU1_G002844 Pythium ultimum PYU1_G002844 N 0.000
PYU1_G002847 Pythium ultimum PYU1_G002847 N 0.000
PYU1_G002849 Pythium ultimum PYU1_G002849 I 0.000
PYU1_G003099 Pythium ultimum PYU1_G003099 N 0.000