ENSSHAG00000012290 (Sarcophilus harrisii)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSSHAG00000012290 T340452_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN

NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.920 1.000
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB

VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.920 1.000
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN

NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.920 1.000
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN

NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.920 1.000
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH

DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.920 1.000
TBX2
M11381_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.920 1.000
TBX2
M11382_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.920 1.000
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN

NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.920 1.000
Tbx3
M00834_2.00
Mus musculus
NHNDCACNHN

NDNGTGHNDN
PBM
Weirauch et al.(2013)
pTH3998
0.906 0.950
TBX3
M05801_2.00
Homo sapiens
NDSGTGTBRN

NYVACACSHN
SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX
0.906 0.950
TBX3
M09426_2.00
Homo sapiens
DVDGGTGBNAR

YTNVCACCHBH
Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C
0.906 0.950
Tbx3
M09429_2.00
Mus musculus
RRGGTGBBR

YVVCACCYY
Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B
0.906 0.950
TBX3
M05802_2.00
Homo sapiens
DAGGTGTKAN

NTMACACCTH
SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX
0.906 0.950
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN

NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.887 0.972
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN

NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.887 0.967
XP_008203914.1
M01029_2.00
Nasonia vitripennis
AGGTGTBA

TVACACCT
PBM
SebePedros et al.(2013)
pTH9336
0.842 0.873
estExt_fgenesh2_pg.C_1570024
M01030_2.00
Branchiostoma floridae
NHNDCACNHN

NDNGTGHNDN
PBM
SebePedros et al.(2013)
pTH9244
0.808 0.724
Tbx5
M00833_2.00
Mus musculus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2013)
pTH3775
0.799 0.657
TBX5
M03552_2.00
Homo sapiens
AGGTGTBA

TVACACCT
SELEX
Jolma et al.(2013)
TBX5_1
0.799 0.657
TBX5
M03553_2.00
Homo sapiens
AGGTGTKANWWNTVACACCT

AGGTGTBANWWNTMACACCT
SELEX
Jolma et al.(2013)
TBX5_2
0.799 0.657
Tbx5
M09649_2.00
Mus musculus
AGGTGHBA

TVDCACCT
Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529
0.799 0.657
TBX5
M11374_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_01
0.799 0.657
TBX5
M11375_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_02
0.799 0.657
Tbx5
M11387_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_05
0.799 0.657
TBX5
M11376_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q2
0.799 0.657
TBX5
M11377_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q5
0.799 0.657
Tbx4
M00831_2.00
Mus musculus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2013)
pTH3973
0.785 0.657
TBX4
M03558_2.00
Homo sapiens
AGGTGTBA

TVACACCT
SELEX
Jolma et al.(2013)
TBX4_1
0.785 0.657
TBX4
M03559_2.00
Homo sapiens
AGGTGTBANWWNTVACACBT

AVGTGTBANWWNTVACACCT
SELEX
Jolma et al.(2013)
TBX4_2
0.785 0.657
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.782 0.707
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSHAP00000014388 T-box 46 226

Links

Other T-box family TFs
Other Sarcophilus harrisii TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.000
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.000
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.000
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.000
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.000
DREB2D Arabidopsis thaliana AT1G75490 D 0.000
DREB2G Arabidopsis thaliana AT5G18450 D 0.000
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.000
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.000
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.000
Bo9g155940 Brassica oleracea Bo9g155940 I 0.000
Bo6g119660 Brassica oleracea Bo6g119660 I 0.000
Bo6g086320 Brassica oleracea Bo6g086320 I 0.000
Bo3g013160 Brassica oleracea Bo3g013160 I 0.000
Bo2g083920 Brassica oleracea Bo2g083920 I 0.000
Bo2g016490 Brassica oleracea Bo2g016490 I 0.000
Bra023674 Brassica rapa Bra023674 I 0.000
Bra015840 Brassica rapa Bra015840 I 0.000
Bra008200 Brassica rapa Bra008200 I 0.000
Bra006460 Brassica rapa Bra006460 I 0.000
Bra003752 Brassica rapa Bra003752 I 0.000
Bra002159 Brassica rapa Bra002159 I 0.000
PK08602.1 Cannabis sativa PK08602.1 D 0.000
PK07402.1 Cannabis sativa PK07402.1 D 0.000
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.000
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.000
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.000
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.000
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.000
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.000
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.000
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.000
Ca_10770 Cicer arietinum Ca_10770 I 0.000
Cla006713 Citrullus lanatus Cla006713 I 0.000
Cla021113 Citrullus lanatus Cla021113 I 0.000
Cla022803 Citrullus lanatus Cla022803 I 0.000
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.000
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.000
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.000
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.000
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.000
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.000
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.000
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.000
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.000
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.000
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.000
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.000
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.000
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.000
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.000
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.000
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.000
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.000
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.000
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.000
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.000
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.000
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.000
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.000
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.000
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.000
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.000
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.000
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.000
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.000
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.000
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.000
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.000
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.000
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.000
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.000
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.000
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.000
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.000
MDP0000295902 Malus domestica MDP0000295902 I 0.000
MDP0000153866 Malus domestica MDP0000153866 I 0.000
MDP0000223609 Malus domestica MDP0000223609 I 0.000
MDP0000250924 Malus domestica MDP0000250924 I 0.000
MDP0000141335 Malus domestica MDP0000141335 I 0.000
MDP0000250927 Malus domestica MDP0000250927 I 0.000
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.000
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.000
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.000
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.000
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.000
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.000
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.000
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.000
mgf024545m Mimulus guttatus mgf024545m I 0.000
mgf017629m Mimulus guttatus mgf017629m I 0.000
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.000
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.000
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.000
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.000
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.000
OBART03G05550 Oryza barthii OBART03G05550 I 0.000
OB08G30790 Oryza brachyantha OB08G30790 I 0.000
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.000
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.000
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.000
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.000
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.000
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.000
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.000
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.000
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.000
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.000
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.000
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.000
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.000
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.000
DREB2E Oryza sativa OS03G0174400 I 0.000
DREB2C Oryza sativa OS08G0565200 I 0.000
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.000
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.000
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.000
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.000
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.000
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.000
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.000
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.000
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.000
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.000
Pm003634 Prunus mume Pm003634 I 0.000
Pm006274 Prunus mume Pm006274 I 0.000
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.000
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.000
29680.m001737 Ricinus communis 29680.m001737 I 0.000
30170.m014115 Ricinus communis 30170.m014115 I 0.000
29729.m002292 Ricinus communis 29729.m002292 I 0.000
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.000
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.000
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.000
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.000
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.000
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.000
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.000
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.000
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.000
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.000
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.000
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.000
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.000
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.000
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.000
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.000
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.000
TCM_026121 Theobroma cacao TCM_026121 I 0.000
TCM_034132 Theobroma cacao TCM_034132 I 0.000
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.000
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.000
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.000
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.000
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.000
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.000
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.000
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.000