TBX2 (Tetraodon nigroviridis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSTNIG00000014395 T340532_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN

NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.906 0.994
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN

NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.906 0.989
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN

NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.873 0.961
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB

VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.873 0.961
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN

NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.873 0.961
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN

NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.873 0.961
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH

DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.873 0.961
TBX2
M11381_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.873 0.961
TBX2
M11382_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.873 0.961
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN

NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.873 0.961
Tbx3
M00834_2.00
Mus musculus
NHNDCACNHN

NDNGTGHNDN
PBM
Weirauch et al.(2013)
pTH3998
0.861 0.928
TBX3
M05801_2.00
Homo sapiens
NDSGTGTBRN

NYVACACSHN
SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX
0.861 0.928
TBX3
M09426_2.00
Homo sapiens
DVDGGTGBNAR

YTNVCACCHBH
Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C
0.861 0.928
Tbx3
M09429_2.00
Mus musculus
RRGGTGBBR

YVVCACCYY
Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B
0.861 0.928
TBX3
M05802_2.00
Homo sapiens
DAGGTGTKAN

NTMACACCTH
SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX
0.861 0.928
XP_008203914.1
M01029_2.00
Nasonia vitripennis
AGGTGTBA

TVACACCT
PBM
SebePedros et al.(2013)
pTH9336
0.795 0.856
estExt_fgenesh2_pg.C_1570024
M01030_2.00
Branchiostoma floridae
NHNDCACNHN

NDNGTGHNDN
PBM
SebePedros et al.(2013)
pTH9244
0.783 0.711
Tbx5
M00833_2.00
Mus musculus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2013)
pTH3775
0.753 0.628
TBX5
M03552_2.00
Homo sapiens
AGGTGTBA

TVACACCT
SELEX
Jolma et al.(2013)
TBX5_1
0.753 0.628
TBX5
M03553_2.00
Homo sapiens
AGGTGTKANWWNTVACACCT

AGGTGTBANWWNTMACACCT
SELEX
Jolma et al.(2013)
TBX5_2
0.753 0.628
Tbx5
M09649_2.00
Mus musculus
AGGTGHBA

TVDCACCT
Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529
0.753 0.628
TBX5
M11374_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_01
0.753 0.628
TBX5
M11375_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_02
0.753 0.628
Tbx5
M11387_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_05
0.753 0.628
TBX5
M11376_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q2
0.753 0.628
TBX5
M11377_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q5
0.753 0.628
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.739 0.689
Tbx4
M00831_2.00
Mus musculus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2013)
pTH3973
0.738 0.633
TBX4
M03558_2.00
Homo sapiens
AGGTGTBA

TVACACCT
SELEX
Jolma et al.(2013)
TBX4_1
0.738 0.633
TBX4
M03559_2.00
Homo sapiens
AGGTGTBANWWNTVACACBT

AVGTGTBANWWNTVACACCT
SELEX
Jolma et al.(2013)
TBX4_2
0.738 0.633
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000017412 T-box 99 278

Links

Other T-box family TFs
Other Tetraodon nigroviridis TFs

280 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI003171 Acyrthosiphon pisum ACYPI003171 I 0.000
AAEL007605 Aedes aegypti AAEL007605 I 0.000
AALB009392 Anopheles albimanus AALB009392 I 0.000
AARA001657 Anopheles arabiensis AARA001657 I 0.000
AATE015903 Anopheles atroparvus AATE015903 I 0.000
ACHR005624 Anopheles christyi ACHR005624 I 0.000
ACOM033755 Anopheles coluzzii ACOM033755 I 0.000
ACUA007696 Anopheles culicifacies ACUA007696 I 0.000
ADIR010043 Anopheles dirus ADIR010043 I 0.000
AEPI006954 Anopheles epiroticus AEPI006954 I 0.000
AFAF019020 Anopheles farauti AFAF019020 I 0.000
AFUN009220 Anopheles funestus AFUN009220 I 0.000
AGAP001187 Anopheles gambiae AGAP001187 I 0.000
AMEC019717 Anopheles melas AMEC019717 I 0.000
AMEM015725 Anopheles merus AMEM015725 I 0.000
AMIN002288 Anopheles minimus AMIN002288 I 0.000
AQUA006381 Anopheles quadriannulatus AQUA006381 I 0.000
ASIS006834 Anopheles sinensis ASIS006834 I 0.000
ASTEI08022 Anopheles stephensi ASTEI08022 I 0.000
GB55715 Apis mellifera GB55715 I 0.000
ACEP13610 Atta cephalotes ACEP13610 I 0.000
Cflo_05239--XP_623857.2_APIME Camponotus floridanus Cflo_05239--XP_623857.2_APIME I 0.000
CLEC005286 Cimex lectularius CLEC005286 I 0.000
CGI_10022123 Crassostrea gigas CGI_10022123 I 0.000
CpipJ_CPIJ014526 Culex pipiens CpipJ_CPIJ014526 I 0.000
CPIJ014526 Culex quinquefasciatus CPIJ014526 I 0.000
GF21154 Drosophila ananassae FBgn0098157 I 0.000
GG19652 Drosophila erecta FBgn0111854 I 0.000
GH11890 Drosophila grimshawi FBgn0119369 I 0.000
ct Drosophila melanogaster FBgn0004198 D 0.000
GL14717 Drosophila persimilis FBgn0152321 I 0.000
GA23816 Drosophila pseudoobscura FBgn0245215 I 0.000
GD16852 Drosophila simulans FBgn0188436 I 0.000
GJ19212 Drosophila virilis FBgn0206357 I 0.000
GK16157 Drosophila willistoni FBgn0218159 I 0.000
GE15727 Drosophila yakuba FBgn0233294 I 0.000
HHAL001955-PA Halyomorpha halys HHAL001955-PA I 0.000
Hsal_01674--XP_623857.2_APIME Harpegnathos saltator Hsal_01674--XP_623857.2_APIME I 0.000
ISCW022880 Ixodes scapularis ISCW022880 I 0.000
LDEC001901 Leptinotarsa decemlineata LDEC001901 I 0.000
LCUP013173 Lucilia cuprina LCUP013173 I 0.000
LLOJ004256 Lutzomyia longipalpis LLOJ004256 I 0.000
MESCA006621 Megaselia scalaris MESCA006621 I 0.000
MDOA010660 Musca domestica MDOA010660 I 0.000
NV11750 Nasonia vitripennis NV11750 I 0.000
PPAI008546 Phlebotomus papatasi PPAI008546 I 0.000
RPRC011429 Rhodnius prolixus RPRC011429 I 0.000
SMAR001184 Strigamia maritima SMAR001184 I 0.000
tetur29g01500 Tetranychus urticae tetur29g01500 I 0.000
TC015699 Tribolium castaneum TC015699 I 0.000
L798_01119 Zootermopsis nevadensis L798_01119 I 0.000