CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GH16540
(
Drosophila grimshawi
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
FBgn0124011
T340662_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Doc3
M03990_2.00
Drosophila melanogaster
NRGGTGTBAD
HTVACACCYN
SELEX
Nitta et al.(2015)
Doc3_1
0.883
0.923
Doc3
M03991_2.00
Drosophila melanogaster
DAGGTGTBAN
NTVACACCTH
SELEX
Nitta et al.(2015)
Doc3_2
0.883
0.923
Doc2
M03992_2.00
Drosophila melanogaster
DRGGTGTBAN
NTVACACCYH
SELEX
Nitta et al.(2015)
Doc2_1
0.839
0.856
Doc2
M03993_2.00
Drosophila melanogaster
NAGGTGTBAN
NTVACACCTN
SELEX
Nitta et al.(2015)
Doc2_2
0.839
0.856
Doc2
M06454_2.00
Drosophila melanogaster
ARGYGTGAA
TTCACRCYT
B1H
Zhu et al.(2011)
Doc2_SANGER_5_FBgn0035956
0.839
0.856
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.751
0.602
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN
NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.741
0.586
Tbx3
M00834_2.00
Mus musculus
NHNDCACNHN
NDNGTGHNDN
PBM
Weirauch et al.(2013)
pTH3998
0.741
0.586
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB
VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.741
0.586
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN
NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.741
0.586
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN
NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.741
0.586
TBX3
M05801_2.00
Homo sapiens
NDSGTGTBRN
NYVACACSHN
SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX
0.741
0.586
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH
DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.741
0.586
TBX3
M09426_2.00
Homo sapiens
DVDGGTGBNAR
YTNVCACCHBH
Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C
0.741
0.586
Tbx3
M09429_2.00
Mus musculus
RRGGTGBBR
YVVCACCYY
Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B
0.741
0.586
TBX2
M11381_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.741
0.586
TBX2
M11382_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.741
0.586
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN
NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.741
0.586
TBX3
M05802_2.00
Homo sapiens
DAGGTGTKAN
NTMACACCTH
SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX
0.741
0.586
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0150446
T-box
64
244
AKLENNELWQQFHHIGTEMIITKSGRRMFPSMRVSFTGLEEEANYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPDSPATGKHWQSQALLFSKVKLTNNTMDNNGHIVLASMHKYQPRLHIIRTADLTQIAWAPQQAYVFPETEFIAVTAYQNDRITKLKIDHNPFAKGFRE
Links
Other
T-box
family TFs
Other
Drosophila grimshawi
TFs
156 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy