CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMAR005933
(
Strigamia maritima
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
SMAR005933
T340886_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TBX19
M03562_2.00
Homo sapiens
NDTVRCACVTANGTGYKANN
NNTMRCACNTABGTGYBAHN
SELEX
Jolma et al.(2013)
TBX19_1
0.747
0.559
TBX19
M05803_2.00
Homo sapiens
NAGGTGYBAHWDTMRCACNTN
NANGTGYKAHWDTVRCACCTN
SELEX
Yin et al.(2017)
TBX19_eDBD_HT-SELEX
0.747
0.559
TBX19
M05804_2.00
Homo sapiens
NANGTGYKAHWDTVRCACSTN
NASGTGYBAHWDTMRCACNTN
SELEX
Yin et al.(2017)
TBX19_eDBD_Methyl-HT-SELEX
0.747
0.559
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMAR005933-PA
T-box
37
217
VRLLEMPLWSQFRDQTNEMIVTKTGRRMFPVFKIDVSGLDANGMYSIFLEFVQLDSHRWRFRNGQWTPGGDSEPRRSTSDTVYTHPESPNFGAHWMKNIVSFEKIKLSSKPHDNAQIVINSMHRYQPRIHIIKVEIPSPIKCYINSFTFPETQFIAVTAYQNQEVTNLKIRNNPFAKAFID
Links
Other
T-box
family TFs
Other
Strigamia maritima
TFs
56 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy