CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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tbx-2
(
Caenorhabditis elegans
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
WBGene00006543
T340933_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN
NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.790
0.729
Tbx3
M00834_2.00
Mus musculus
NHNDCACNHN
NDNGTGHNDN
PBM
Weirauch et al.(2013)
pTH3998
0.790
0.729
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB
VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.790
0.729
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN
NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.790
0.729
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN
NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.790
0.729
TBX3
M05801_2.00
Homo sapiens
NDSGTGTBRN
NYVACACSHN
SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX
0.790
0.729
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH
DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.790
0.729
TBX3
M09426_2.00
Homo sapiens
DVDGGTGBNAR
YTNVCACCHBH
Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C
0.790
0.729
Tbx3
M09429_2.00
Mus musculus
RRGGTGBBR
YVVCACCYY
Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B
0.790
0.729
TBX2
M11381_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.790
0.729
TBX2
M11382_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.790
0.729
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN
NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.790
0.729
TBX3
M05802_2.00
Homo sapiens
DAGGTGTKAN
NTMACACCTH
SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX
0.790
0.729
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN
NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.761
0.724
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN
NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.761
0.718
XP_008203914.1
M01029_2.00
Nasonia vitripennis
AGGTGTBA
TVACACCT
PBM
SebePedros et al.(2013)
pTH9336
0.752
0.696
Doc3
M03990_2.00
Drosophila melanogaster
NRGGTGTBAD
HTVACACCYN
SELEX
Nitta et al.(2015)
Doc3_1
0.740
0.547
Doc3
M03991_2.00
Drosophila melanogaster
DAGGTGTBAN
NTVACACCTH
SELEX
Nitta et al.(2015)
Doc3_2
0.740
0.547
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
F21H11.3
T-box
63
243
VELDERELWQQFSQCGTEMVITKSGRRIFPAYRVKISGLDKKSQYFVMMDLVPADEHRYKFNNSRWMIAGKADPEMPKTLYIHPDSPSTGEHWMSKGANFHKLKLTNNISDKHGYTILNSMHKYQPRLHVVRCADRHNLMYSTFRTFVFRETEFIAVTAYQNEKVTELKIENNPFAKGFRD
Links
Other
T-box
family TFs
Other
Caenorhabditis elegans
TFs
185 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy