Alligator_sinensis_CCG002049.1 (Alligator sinensis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 Alligator_sinensis_CCG002049.1 T340995_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbx4
M00831_2.00
Mus musculus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2013)
pTH3973
0.920 0.995
TBX4
M03558_2.00
Homo sapiens
AGGTGTBA

TVACACCT
SELEX
Jolma et al.(2013)
TBX4_1
0.920 0.995
TBX4
M03559_2.00
Homo sapiens
AGGTGTBANWWNTVACACBT

AVGTGTBANWWNTVACACCT
SELEX
Jolma et al.(2013)
TBX4_2
0.920 0.995
Tbx5
M00833_2.00
Mus musculus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2013)
pTH3775
0.899 0.934
TBX5
M03552_2.00
Homo sapiens
AGGTGTBA

TVACACCT
SELEX
Jolma et al.(2013)
TBX5_1
0.899 0.934
TBX5
M03553_2.00
Homo sapiens
AGGTGTKANWWNTVACACCT

AGGTGTBANWWNTMACACCT
SELEX
Jolma et al.(2013)
TBX5_2
0.899 0.934
Tbx5
M09649_2.00
Mus musculus
AGGTGHBA

TVDCACCT
Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529
0.899 0.934
TBX5
M11374_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_01
0.899 0.934
TBX5
M11375_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_02
0.899 0.934
Tbx5
M11387_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_05
0.899 0.934
TBX5
M11376_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q2
0.899 0.934
TBX5
M11377_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q5
0.899 0.934
XP_008203914.1
M01029_2.00
Nasonia vitripennis
AGGTGTBA

TVACACCT
PBM
SebePedros et al.(2013)
pTH9336
0.790 0.621
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN

NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.785 0.654
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB

VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.785 0.654
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN

NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.785 0.654
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN

NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.785 0.654
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH

DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.785 0.654
TBX2
M11381_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.785 0.654
TBX2
M11382_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.785 0.654
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN

NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.785 0.654
Tbx3
M00834_2.00
Mus musculus
NHNDCACNHN

NDNGTGHNDN
PBM
Weirauch et al.(2013)
pTH3998
0.783 0.637
TBX3
M05801_2.00
Homo sapiens
NDSGTGTBRN

NYVACACSHN
SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX
0.783 0.637
TBX3
M09426_2.00
Homo sapiens
DVDGGTGBNAR

YTNVCACCHBH
Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C
0.783 0.637
Tbx3
M09429_2.00
Mus musculus
RRGGTGBBR

YVVCACCYY
Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B
0.783 0.637
TBX3
M05802_2.00
Homo sapiens
DAGGTGTKAN

NTMACACCTH
SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX
0.783 0.637
estExt_fgenesh2_pg.C_1570024
M01030_2.00
Branchiostoma floridae
NHNDCACNHN

NDNGTGHNDN
PBM
SebePedros et al.(2013)
pTH9244
0.773 0.676
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.773 0.670
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN

NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.752 0.637
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN

NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.752 0.637
Tbx20
M00835_2.00
Mus musculus
NRRGTGTBAN

NTVACACYYN
PBM
Weirauch et al.(2013)
pTH3777
0.741 0.610
TBX20
M03565_2.00
Homo sapiens
AGGTGTKARVGYGTGA

TCACRCBYTMACACCT
SELEX
Jolma et al.(2013)
TBX20_1
0.741 0.610
TBX20
M03566_2.00
Homo sapiens
AGGTGTGAAWDTSACACBT

AVGTGTSAHWTTCACACCT
SELEX
Jolma et al.(2013)
TBX20_2
0.741 0.610
TBX20
M03567_2.00
Homo sapiens
NNNDAGGTGTGAAND

HNTTCACACCTHNNN
SELEX
Jolma et al.(2013)
TBX20_3
0.741 0.610
TBX20
M03568_2.00
Homo sapiens
DAGGTGTGAWR

YWTCACACCTH
SELEX
Jolma et al.(2013)
TBX20_4
0.741 0.610
TBX20
M03569_2.00
Homo sapiens
AGGTGTKANGKTGTSA

TSACAMCNTMACACCT
SELEX
Jolma et al.(2013)
TBX20_5
0.741 0.610
TBX20
M05813_2.00
Homo sapiens
DAGGTGTKARSGTGTGAA

TTCACACSYTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1
0.741 0.610
TBX20
M05814_2.00
Homo sapiens
NAGGTGTGAAWTTCACACCTN

NAGGTGTGAAWTTCACACCTN
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2
0.741 0.610
TBX20
M05817_2.00
Homo sapiens
DRRGTGTBADVGYGTBAN

NTVACRCBHTVACACYYH
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1
0.741 0.610
TBX20
M05818_2.00
Homo sapiens
WTCACACYTAGGTGTKAM

KTMACACCTARGTGTGAW
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2
0.741 0.610
Tbx20
M09430_2.00
Mus musculus
NDSTGNTGACAGSN

NSCTGTCANCASHN
Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C
0.741 0.610
Tbx20
M09650_2.00
Mus musculus
SCTGTCADCASN

NSTGHTGACAGS
Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636
0.741 0.610
TBX20
M11385_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX20_05
0.741 0.610
TBX20
M05815_2.00
Homo sapiens
DAGGTGTKAASGYGTKAA

TTMACRCSTTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1
0.741 0.610
TBX20
M05816_2.00
Homo sapiens
DASGTGTGAWWWTCACACCTH

DAGGTGTGAWWWTCACACSTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2
0.741 0.610
TBX20
M05819_2.00
Homo sapiens
DRGGYGTBARVGYGTKAN

NTMACRCBYTVACRCCYH
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1
0.741 0.610
TBX20
M05820_2.00
Homo sapiens
TTMACRCCTAVGTGTGAA

TTCACACBTAGGYGTKAA
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2
0.741 0.610
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG002049.1 T-box 94 276

Links

Other T-box family TFs
Other Alligator sinensis TFs

340 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R005676 Calypte anna Aan_R005676 I 0.000
Afo_R004510 Aptenodytes forsteri Afo_R004510 I 0.000
Afo_R004730 Aptenodytes forsteri Afo_R004730 I 0.000
Alligator_sinensis_CCG009650.1 Alligator sinensis Alligator_sinensis_CCG009650.1 I 0.000
Alligator_sinensis_CCG009650.2 Alligator sinensis Alligator_sinensis_CCG009650.2 I 0.000
Brh_R008527 Buceros rhinoceros Brh_R008527 I 0.000
Cmyd_10014527 Chelonia mydas Cmyd_10014527 I 0.000
ENSACAG00000006345 Anolis carolinensis ENSACAG00000006345 I 0.000
BATF Anolis carolinensis ENSACAG00000016951 I 0.000
ENSAMEG00000001350 Ailuropoda melanoleuca ENSAMEG00000001350 I 0.000
ENSAMEG00000018338 Ailuropoda melanoleuca ENSAMEG00000018338 I 0.000
ENSAMXG00000010496 Astyanax mexicanus ENSAMXG00000010496 I 0.000
ENSAMXG00000013814 Astyanax mexicanus ENSAMXG00000013814 I 0.000
ENSAPLG00000011595 Anas platyrhynchos ENSAPLG00000011595 I 0.000
ENSAPLG00000012252 Anas platyrhynchos ENSAPLG00000012252 I 0.000
BATF3 Bos taurus ENSBTAG00000011982 I 0.000
BATF Bos taurus ENSBTAG00000025405 I 0.000
BATF Canis familiaris ENSCAFG00000017044 I 0.000
BATF3 Canis familiaris ENSCAFG00000032161 I 0.000
BATF Choloepus hoffmanni ENSCHOG00000005766 I 0.000
BATF3 Callithrix jacchus ENSCJAG00000015732 I 0.000
BATF Callithrix jacchus ENSCJAG00000020651 I 0.000
ENSCPOG00000015436 Cavia porcellus ENSCPOG00000015436 I 0.000
ENSCPOG00000021172 Cavia porcellus ENSCPOG00000021172 I 0.000
ENSCSAG00000012114 Chlorocebus sabaeus ENSCSAG00000012114 I 0.000
ENSCSAG00000015412 Chlorocebus sabaeus ENSCSAG00000015412 I 0.000
batf Danio rerio ENSDARG00000011818 I 0.000
batf3 Danio rerio ENSDARG00000042577 I 0.000
BATF Dasypus novemcinctus ENSDNOG00000047121 I 0.000
ENSDORG00000006028 Dipodomys ordii ENSDORG00000006028 I 0.000
ENSDORG00000012889 Dipodomys ordii ENSDORG00000012889 I 0.000
BATF3 Equus caballus ENSECAG00000011042 I 0.000
BATF Equus caballus ENSECAG00000016422 I 0.000
BATF3 Echinops telfairi ENSETEG00000010953 I 0.000
ENSFALG00000006360 Ficedula albicollis ENSFALG00000006360 I 0.000
ENSFALG00000012404 Ficedula albicollis ENSFALG00000012404 I 0.000
BATF Felis catus ENSFCAG00000014194 I 0.000
BATF3 Felis catus ENSFCAG00000014614 I 0.000
BATF3 Homo sapiens ENSG00000123685 D 0.000
BATF Homo sapiens ENSG00000156127 D 0.000
batf Gasterosteus aculeatus ENSGACG00000010594 I 0.000
ENSGALG00000009816 Gallus gallus ENSGALG00000009816 I 0.000
ENSGALG00000010323 Gallus gallus ENSGALG00000010323 I 0.000
BATF Gorilla gorilla ENSGGOG00000002267 I 0.000
BATF3 Gorilla gorilla ENSGGOG00000023446 I 0.000
ENSGMOG00000011150 Gadus morhua ENSGMOG00000011150 I 0.000
ENSLACG00000002955 Latimeria chalumnae ENSLACG00000002955 I 0.000
ENSLACG00000017801 Latimeria chalumnae ENSLACG00000017801 I 0.000
BATF Loxodonta africana ENSLAFG00000011315 I 0.000
BATF3 Loxodonta africana ENSLAFG00000027351 I 0.000
ENSLOCG00000000836 Lepisosteus oculatus ENSLOCG00000000836 I 0.000
ENSLOCG00000010533 Lepisosteus oculatus ENSLOCG00000010533 I 0.000
ENSMEUG00000002840 Macropus eugenii ENSMEUG00000002840 I 0.000
BATF Meleagris gallopavo ENSMGAG00000012758 I 0.000
ENSMICG00000014634 Microcebus murinus ENSMICG00000014634 I 0.000
ENSMICG00000016046 Microcebus murinus ENSMICG00000016046 I 0.000
BATF Myotis lucifugus ENSMLUG00000013360 I 0.000
BATF3 Myotis lucifugus ENSMLUG00000025827 I 0.000
BATF Macaca mulatta ENSMMUG00000003834 I 0.000
BATF3 Macaca mulatta ENSMMUG00000015056 I 0.000
BATF3 Monodelphis domestica ENSMODG00000003055 I 0.000
BATF Monodelphis domestica ENSMODG00000005905 I 0.000
ENSMPUG00000009143 Mustela putorius furo ENSMPUG00000009143 I 0.000
ENSMPUG00000013390 Mustela putorius furo ENSMPUG00000013390 I 0.000
Batf3 Mus musculus ENSMUSG00000026630 D 0.000
Batf Mus musculus ENSMUSG00000034266 D 0.000
ENSNLEG00000002945 Nomascus leucogenys ENSNLEG00000002945 I 0.000
ENSNLEG00000016492 Nomascus leucogenys ENSNLEG00000016492 I 0.000
BATF3 Ornithorhynchus anatinus ENSOANG00000008505 I 0.000
ENSOARG00000001812 Ovis aries ENSOARG00000001812 I 0.000
ENSOARG00000010458 Ovis aries ENSOARG00000010458 I 0.000
BATF Oryctolagus cuniculus ENSOCUG00000026625 I 0.000
BATF3 Otolemur garnettii ENSOGAG00000008684 I 0.000
BATF Otolemur garnettii ENSOGAG00000010133 I 0.000
ENSONIG00000015290 Oreochromis niloticus ENSONIG00000015290 I 0.000
BATF Ochotona princeps ENSOPRG00000012041 I 0.000
BATF3 Ochotona princeps ENSOPRG00000013285 I 0.000
batf Oryzias latipes ENSORLG00000009061 I 0.000
ENSP00000243440 Macaca fascicularis ENSP00000243440 I 0.000
ENSP00000243440-D1 Bos grunniens ENSP00000243440-D1 I 0.000
ENSP00000286639 Macaca fascicularis ENSP00000286639 I 0.000
ENSP00000286639-D1 Bos grunniens ENSP00000286639-D1 I 0.000
ENSPANG00000018466 Papio anubis ENSPANG00000018466 I 0.000
ENSPANG00000021772 Papio anubis ENSPANG00000021772 I 0.000
ENSPFOG00000007199 Poecilia formosa ENSPFOG00000007199 I 0.000
ENSPFOG00000017107 Poecilia formosa ENSPFOG00000017107 I 0.000
ENSPPYG00000000234 Pongo abelii ENSPPYG00000000234 I 0.000
ENSPPYG00000006005 Pongo abelii ENSPPYG00000006005 I 0.000
ENSPSIG00000017659 Pelodiscus sinensis ENSPSIG00000017659 I 0.000
ENSPSIG00000017969 Pelodiscus sinensis ENSPSIG00000017969 I 0.000
BATF3 Pan troglodytes ENSPTRG00000001965 I 0.000
BATF Pan troglodytes ENSPTRG00000006556 I 0.000
BATF Pteropus vampyrus ENSPVAG00000000674 I 0.000
BATF3 Pteropus vampyrus ENSPVAG00000011828 I 0.000
Batf3 Rattus norvegicus ENSRNOG00000003716 I 0.000
Batf Rattus norvegicus ENSRNOG00000008588 I 0.000
ENSSHAG00000011300 Sarcophilus harrisii ENSSHAG00000011300 I 0.000
ENSSHAG00000017205 Sarcophilus harrisii ENSSHAG00000017205 I 0.000
ENSSSCG00000015594 Sus scrofa ENSSSCG00000015594 I 0.000
BATF3 Sus scrofa ENSSSCG00000026587 I 0.000
BATF Sus scrofa ENSSSCG00000030582 I 0.000
ENSSTOG00000007136 Ictidomys tridecemlineatus ENSSTOG00000007136 I 0.000
BATF3 Tupaia belangeri ENSTBEG00000012725 I 0.000
BATF Tupaia belangeri ENSTBEG00000014581 I 0.000
BATF3 Taeniopygia guttata ENSTGUG00000003049 I 0.000
BATF Taeniopygia guttata ENSTGUG00000012220 I 0.000
batf Tetraodon nigroviridis ENSTNIG00000016349 I 0.000
batf Takifugu rubripes ENSTRUG00000009390 I 0.000
ENSTSYG00000005296 Tarsius syrichta ENSTSYG00000005296 I 0.000
BATF Tursiops truncatus ENSTTRG00000009370 I 0.000
BATF3 Tursiops truncatus ENSTTRG00000016583 I 0.000
BATF Vicugna pacos ENSVPAG00000003093 I 0.000
ENSXMAG00000003951 Xiphophorus maculatus ENSXMAG00000003951 I 0.000
Gfo_R010938 Geospiza fortis Gfo_R010938 I 0.000
Gfo_R012905 Geospiza fortis Gfo_R012905 I 0.000
Myotis_brandtii_BATF_10012950 Myotis brandtii Myotis_brandtii_BATF_10012950 I 0.000
Ogr08031 Ophisaurus gracilis Ogr08031 I 0.000
Pvit_01217 Pogona vitticeps Pvit_01217 I 0.000
Tal_R011063 Tyto alba Tal_R011063 I 0.000
batf Xenopus tropicalis XB-GENE-6258076 I 0.000