Alligator_sinensis_CCG002049.1 (Alligator sinensis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 Alligator_sinensis_CCG002049.1 T340995_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbx4
M00831_2.00
Mus musculus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2013)
pTH3973
0.920 0.995
TBX4
M03558_2.00
Homo sapiens
AGGTGTBA

TVACACCT
SELEX
Jolma et al.(2013)
TBX4_1
0.920 0.995
TBX4
M03559_2.00
Homo sapiens
AGGTGTBANWWNTVACACBT

AVGTGTBANWWNTVACACCT
SELEX
Jolma et al.(2013)
TBX4_2
0.920 0.995
Tbx5
M00833_2.00
Mus musculus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2013)
pTH3775
0.899 0.934
TBX5
M03552_2.00
Homo sapiens
AGGTGTBA

TVACACCT
SELEX
Jolma et al.(2013)
TBX5_1
0.899 0.934
TBX5
M03553_2.00
Homo sapiens
AGGTGTKANWWNTVACACCT

AGGTGTBANWWNTMACACCT
SELEX
Jolma et al.(2013)
TBX5_2
0.899 0.934
Tbx5
M09649_2.00
Mus musculus
AGGTGHBA

TVDCACCT
Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529
0.899 0.934
TBX5
M11374_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_01
0.899 0.934
TBX5
M11375_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_02
0.899 0.934
Tbx5
M11387_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_05
0.899 0.934
TBX5
M11376_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q2
0.899 0.934
TBX5
M11377_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q5
0.899 0.934
XP_008203914.1
M01029_2.00
Nasonia vitripennis
AGGTGTBA

TVACACCT
PBM
SebePedros et al.(2013)
pTH9336
0.790 0.621
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN

NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.785 0.654
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB

VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.785 0.654
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN

NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.785 0.654
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN

NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.785 0.654
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH

DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.785 0.654
TBX2
M11381_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.785 0.654
TBX2
M11382_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.785 0.654
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN

NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.785 0.654
Tbx3
M00834_2.00
Mus musculus
NHNDCACNHN

NDNGTGHNDN
PBM
Weirauch et al.(2013)
pTH3998
0.783 0.637
TBX3
M05801_2.00
Homo sapiens
NDSGTGTBRN

NYVACACSHN
SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX
0.783 0.637
TBX3
M09426_2.00
Homo sapiens
DVDGGTGBNAR

YTNVCACCHBH
Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C
0.783 0.637
Tbx3
M09429_2.00
Mus musculus
RRGGTGBBR

YVVCACCYY
Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B
0.783 0.637
TBX3
M05802_2.00
Homo sapiens
DAGGTGTKAN

NTMACACCTH
SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX
0.783 0.637
estExt_fgenesh2_pg.C_1570024
M01030_2.00
Branchiostoma floridae
NHNDCACNHN

NDNGTGHNDN
PBM
SebePedros et al.(2013)
pTH9244
0.773 0.676
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.773 0.670
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN

NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.752 0.637
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN

NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.752 0.637
Tbx20
M00835_2.00
Mus musculus
NRRGTGTBAN

NTVACACYYN
PBM
Weirauch et al.(2013)
pTH3777
0.741 0.610
TBX20
M03565_2.00
Homo sapiens
AGGTGTKARVGYGTGA

TCACRCBYTMACACCT
SELEX
Jolma et al.(2013)
TBX20_1
0.741 0.610
TBX20
M03566_2.00
Homo sapiens
AGGTGTGAAWDTSACACBT

AVGTGTSAHWTTCACACCT
SELEX
Jolma et al.(2013)
TBX20_2
0.741 0.610
TBX20
M03567_2.00
Homo sapiens
NNNDAGGTGTGAAND

HNTTCACACCTHNNN
SELEX
Jolma et al.(2013)
TBX20_3
0.741 0.610
TBX20
M03568_2.00
Homo sapiens
DAGGTGTGAWR

YWTCACACCTH
SELEX
Jolma et al.(2013)
TBX20_4
0.741 0.610
TBX20
M03569_2.00
Homo sapiens
AGGTGTKANGKTGTSA

TSACAMCNTMACACCT
SELEX
Jolma et al.(2013)
TBX20_5
0.741 0.610
TBX20
M05813_2.00
Homo sapiens
DAGGTGTKARSGTGTGAA

TTCACACSYTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1
0.741 0.610
TBX20
M05814_2.00
Homo sapiens
NAGGTGTGAAWTTCACACCTN

NAGGTGTGAAWTTCACACCTN
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2
0.741 0.610
TBX20
M05817_2.00
Homo sapiens
DRRGTGTBADVGYGTBAN

NTVACRCBHTVACACYYH
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1
0.741 0.610
TBX20
M05818_2.00
Homo sapiens
WTCACACYTAGGTGTKAM

KTMACACCTARGTGTGAW
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2
0.741 0.610
Tbx20
M09430_2.00
Mus musculus
NDSTGNTGACAGSN

NSCTGTCANCASHN
Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C
0.741 0.610
Tbx20
M09650_2.00
Mus musculus
SCTGTCADCASN

NSTGHTGACAGS
Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636
0.741 0.610
TBX20
M11385_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX20_05
0.741 0.610
TBX20
M05815_2.00
Homo sapiens
DAGGTGTKAASGYGTKAA

TTMACRCSTTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1
0.741 0.610
TBX20
M05816_2.00
Homo sapiens
DASGTGTGAWWWTCACACCTH

DAGGTGTGAWWWTCACACSTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2
0.741 0.610
TBX20
M05819_2.00
Homo sapiens
DRGGYGTBARVGYGTKAN

NTMACRCBYTVACRCCYH
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1
0.741 0.610
TBX20
M05820_2.00
Homo sapiens
TTMACRCCTAVGTGTGAA

TTCACACBTAGGYGTKAA
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2
0.741 0.610
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG002049.1 T-box 94 276

Links

Other T-box family TFs
Other Alligator sinensis TFs

340 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00056p00204920 Amborella trichopoda AMTR_s00056p00204920 I 0.000
Aquca_001_00195 Aquilegia coerulea Aquca_001_00195 I 0.000
BGIOSGA004364 Oryza indica BGIOSGA004364 N 0.000
BGIOSGA017601 Oryza indica BGIOSGA017601 I 0.000
Bra002448 Brassica rapa Bra002448 I 0.000
BRADI2G46770 Brachypodium distachyon BRADI2G46770 I 0.000
cassava11642.m1 Manihot esculenta cassava11642.m1 I 0.000
Ciclev10009336m.g Citrus clementina Ciclev10009336m.g I 0.000
Eucgr.C02280 Eucalyptus grandis Eucgr.C02280 I 0.000
Eucgr.C02391 Eucalyptus grandis Eucgr.C02391 I 0.000
F775_22184 Aegilops tauschii F775_22184 I 0.000
F775_22442 Aegilops tauschii F775_22442 N 0.000
F775_22853 Aegilops tauschii F775_22853 N 0.000
GLYMA14G10483 Glycine max GLYMA14G10483 I 0.000
GLYMA17G35020 Glycine max GLYMA17G35020 I 0.000
GRMZM2G006352 Zea mays GRMZM2G006352 I 0.000
GRMZM2G115859 Zea mays GRMZM2G115859 I 0.000
GRMZM2G151205 Zea mays GRMZM2G151205 N 0.000
GRMZM2G167829 Zea mays GRMZM2G167829 N 0.000
GSMUA_Achr7G25060_001 Musa acuminata GSMUA_Achr7G25060_001 I 0.000
GSMUA_Achr9G09790_001 Musa acuminata GSMUA_Achr9G09790_001 I 0.000
LPERR01G22970 Leersia perrieri LPERR01G22970 I 0.000
MLOC_5098 Hordeum vulgare MLOC_5098 I 0.000
MLOC_71129 Hordeum vulgare MLOC_71129 I 0.000
MTR_6g090405 Medicago truncatula MTR_6g090405 I 0.000
OB01G36020 Oryza brachyantha OB01G36020 I 0.000
OB01G38240 Oryza brachyantha OB01G38240 N 0.000
OBART01G29250 Oryza barthii OBART01G29250 N 0.000
OGLUM01G33320 Oryza glumaepatula OGLUM01G33320 N 0.000
ONIVA01G33470 Oryza nivara ONIVA01G33470 N 0.000
orange1.1g037024m.g Citrus sinensis orange1.1g037024m.g I 0.000
ORGLA05G0216200 Oryza glaberrima ORGLA05G0216200 I 0.000
ORUFI01G32340 Oryza rufipogon ORUFI01G32340 N 0.000
ORUFI05G26880 Oryza rufipogon ORUFI05G26880 I 0.000
OS01G0722300 Oryza sativa OS01G0722300 N 0.000
OS05G0553400 Oryza sativa OS05G0553400 I 0.000
Pavir.Aa03183 Panicum virgatum Pavir.Aa03183 I 0.000
Pavir.Bb02272 Panicum virgatum Pavir.Bb02272 I 0.000
Pavir.Ea02676 Panicum virgatum Pavir.Ea02676 N 0.000
Pavir.Eb02926 Panicum virgatum Pavir.Eb02926 N 0.000
Pavir.J11789 Panicum virgatum Pavir.J11789 I 0.000
Pavir.J15551 Panicum virgatum Pavir.J15551 I 0.000
Pavir.J34453 Panicum virgatum Pavir.J34453 I 0.000
Sb02g025350 Sorghum bicolor Sb02g025350 I 0.000
Sb03g033160 Sorghum bicolor Sb03g033160 N 0.000
Sb09g027800 Sorghum bicolor Sb09g027800 I 0.000
Si002350m.g Setaria italica Si002350m.g I 0.000
Si004558m.g Setaria italica Si004558m.g N 0.000
Si022874m.g Setaria italica Si022874m.g I 0.000
Si030282m.g Setaria italica Si030282m.g I 0.000
TRAES3BF016200140CFD_g Triticum aestivum TRAES3BF016200140CFD_g N 0.000
TRAES3BF058700130CFD_g Triticum aestivum TRAES3BF058700130CFD_g I 0.000
Traes_1AL_F0688BFDE Triticum aestivum Traes_1AL_F0688BFDE I 0.000
Traes_5BL_C1D4586B1 Triticum aestivum Traes_5BL_C1D4586B1 I 0.000
TRIUR3_05615 Triticum urartu TRIUR3_05615 N 0.000
TRIUR3_25771 Triticum urartu TRIUR3_25771 N 0.000
VIT_11s0016g02780 Vitis vinifera VIT_11s0016g02780 I 0.000