Cmyd_10005826 (Chelonia mydas)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 Cmyd_10005826 T341035_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TBX2
M02495_2.00 		Gasterosteus aculeatus
NNVDCACNHN
NDNGTGHBNN		 PBM
Weirauch et al.(2014)
pTH9182 		0.741 0.624
TBX2
M02496_2.00 		Takifugu rubripes
DAGGTGTBRN
NYVACACCTH		 PBM
Weirauch et al.(2014)
pTH9289 		0.741 0.624
estExt_fgenesh2_pg.C_1570024
M01030_2.00 		Branchiostoma floridae
NHNDCACNHN
NDNGTGHNDN		 PBM
SebePedros et al.(2013)
pTH9244 		0.737 0.663
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10005826 T-box 46 226

Links

Other T-box family TFs
Other Chelonia mydas TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Tal_R011807 Tyto alba Tal_R011807 I 0.863
Gfo_R008747 Geospiza fortis Gfo_R008747 I 0.863
TBX6 Taeniopygia guttata ENSTGUG00000010188 I 0.863
Aan_R008261 Calypte anna Aan_R008261 I 0.863
Brh_R011905 Buceros rhinoceros Brh_R011905 I 0.863
Afo_R009018 Aptenodytes forsteri Afo_R009018 I 0.863
ENSFALG00000007252 Ficedula albicollis ENSFALG00000007252 I 0.863
TBX6 Gallus gallus ENSGALG00000006374 I 0.855
TBX6 Meleagris gallopavo ENSMGAG00000007663 I 0.855
ENSAPLG00000006398 Anas platyrhynchos ENSAPLG00000006398 I 0.855
Alligator_sinensis_CCG014169.1 Alligator sinensis Alligator_sinensis_CCG014169.1 N 0.844
vegt.L Xenopus laevis XB-GENE-6252142 N 0.793
tbx6 Xenopus tropicalis XB-GENE-6257419 I 0.781
BAC20262 Xenopus laevis BAC20262 I 0.780
AAI69776 Xenopus laevis AAI69776 I 0.780
ABC75836 Xenopus laevis ABC75836 I 0.780
Pvit_03730 Pogona vitticeps Pvit_03730 I 0.779
BAH04512 Xenopus tropicalis BAH04512 I 0.776
BAH04511 Xenopus tropicalis BAH04511 I 0.776
ENSSHAG00000002850 Sarcophilus harrisii ENSSHAG00000002850 N 0.776
vegt Xenopus tropicalis XB-GENE-1033829 I 0.776
ENSAMXG00000001195 Astyanax mexicanus ENSAMXG00000001195 I 0.768
vegt.S Xenopus laevis XB-GENE-1033836 N 0.767
ML046417a Mnemiopsis leidyi ML046417a N 0.765
ENSACAG00000008612 Anolis carolinensis ENSACAG00000008612 N 0.764
tbx16 Danio rerio ENSDARG00000007329 I 0.762
ENSLOCG00000006550 Lepisosteus oculatus ENSLOCG00000006550 I 0.760
ENSONIG00000011030 Oreochromis niloticus ENSONIG00000011030 I 0.758
tbx16 Oryzias latipes ENSORLG00000014344 I 0.756
ENSLACG00000012884 Latimeria chalumnae ENSLACG00000012884 I 0.755
CGI_10005914 Crassostrea gigas CGI_10005914 I 0.754
tbx16 Gasterosteus aculeatus ENSGACG00000012454 I 0.748
ENSLOCG00000016254 Lepisosteus oculatus ENSLOCG00000016254 I 0.748
ENSXMAG00000008530 Xiphophorus maculatus ENSXMAG00000008530 I 0.746
TBX3 Monodelphis domestica ENSMODG00000012059 I 0.744
ENSLACG00000015364 Latimeria chalumnae ENSLACG00000015364 I 0.743
Pvit_13524 Pogona vitticeps Pvit_13524 I 0.743
Ocbimv22029974m.g Octopus bimaculoides Ocbimv22029974m.g I 0.742
tbx3 Xenopus tropicalis XB-GENE-1018231 I 0.741
tbx3.L Xenopus laevis XB-GENE-6252891 I 0.741
tbx3.S Xenopus laevis XB-GENE-1018237 I 0.741
TBX2 Takifugu rubripes ENSTRUG00000008297 D 0.741
TBX2 Gasterosteus aculeatus ENSGACG00000013575 D 0.741
ENSPFOG00000016384 Poecilia formosa ENSPFOG00000016384 I 0.741
ENSXMAG00000005715 Xiphophorus maculatus ENSXMAG00000005715 I 0.741
tbx2b Danio rerio ENSDARG00000006120 I 0.741
TBX2 Oryzias latipes ENSORLG00000014792 I 0.741
ENSONIG00000010454 Oreochromis niloticus ENSONIG00000010454 I 0.741
ENSAMXG00000001528 Astyanax mexicanus ENSAMXG00000001528 I 0.741
ENSGMOG00000002896 Gadus morhua ENSGMOG00000002896 I 0.741
fgenesh2_pg.scaffold_89000016 Branchiostoma floridae fgenesh2_pg.scaffold_89000016 I 0.740
ENSP00000358677-D1 Bos grunniens ENSP00000358677-D1 I 0.739
TBX18 Bos taurus ENSBTAG00000018161 I 0.739
ENSOARG00000013317 Ovis aries ENSOARG00000013317 I 0.739
Tbx18 Rattus norvegicus ENSRNOG00000010685 I 0.739
ENSPFOG00000017869 Poecilia formosa ENSPFOG00000017869 I 0.738
ENSAMXG00000007070 Astyanax mexicanus ENSAMXG00000007070 I 0.737
estExt_fgenesh2_pg.C_1570024 Branchiostoma floridae estExt_fgenesh2_pg.C_1570024 D 0.737
estExt_fgenesh2_pg.C_1570035 Branchiostoma floridae estExt_fgenesh2_pg.C_1570035 I 0.737
e_gw.418.20.1 Branchiostoma floridae e_gw.418.20.1 I 0.736
estExt_fgenesh2_pg.C_1050030 Branchiostoma floridae estExt_fgenesh2_pg.C_1050030 I 0.736
Gfo_R010838 Geospiza fortis Gfo_R010838 I 0.735