CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_03730
(
Pogona vitticeps
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00907 (T-box)
IPR001699
Pvit_03730
T341141_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbx4
M00831_2.00
Mus musculus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2013)
pTH3973
0.749
0.626
TBX4
M03558_2.00
Homo sapiens
AGGTGTBA
TVACACCT
SELEX
Jolma et al.(2013)
TBX4_1
0.749
0.626
TBX4
M03559_2.00
Homo sapiens
AGGTGTBANWWNTVACACBT
AVGTGTBANWWNTVACACCT
SELEX
Jolma et al.(2013)
TBX4_2
0.749
0.626
Tbx5
M00833_2.00
Mus musculus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2013)
pTH3775
0.737
0.643
TBX5
M03552_2.00
Homo sapiens
AGGTGTBA
TVACACCT
SELEX
Jolma et al.(2013)
TBX5_1
0.737
0.643
TBX5
M03553_2.00
Homo sapiens
AGGTGTKANWWNTVACACCT
AGGTGTBANWWNTMACACCT
SELEX
Jolma et al.(2013)
TBX5_2
0.737
0.643
Tbx5
M09649_2.00
Mus musculus
AGGTGHBA
TVDCACCT
Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529
0.737
0.643
TBX5
M11374_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_01
0.737
0.643
TBX5
M11375_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_02
0.737
0.643
Tbx5
M11387_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_05
0.737
0.643
TBX5
M11376_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q2
0.737
0.643
TBX5
M11377_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q5
0.737
0.643
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_03730
T-box
24
206
VTLEDRELWAKFHQVGTEMIITKSGRWMFPQCKIKVTGLLPGAKYLLLVDFVPLDNFRYKWNKDKWEIAGKAEPRPPCRTYVHPDSPAPGSHWMKETVSFQKLKLTNNTLDQQGHVILHSMHRYKPRFHILQAEELFGPAGGWSAFHTFSFPETAFTSVTAYQNKEVTKLKIYNNPFAKGFRE
Links
Other
T-box
family TFs
Other
Pogona vitticeps
TFs
111 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy