e_gw.90.81.1 (Branchiostoma floridae)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 e_gw.90.81.1 T341168_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TBX20
M03565_2.00
Homo sapiens
AGGTGTKARVGYGTGA

TCACRCBYTMACACCT
SELEX
Jolma et al.(2013)
TBX20_1
0.862 0.918
TBX20
M03566_2.00
Homo sapiens
AGGTGTGAAWDTSACACBT

AVGTGTSAHWTTCACACCT
SELEX
Jolma et al.(2013)
TBX20_2
0.862 0.918
TBX20
M03567_2.00
Homo sapiens
NNNDAGGTGTGAAND

HNTTCACACCTHNNN
SELEX
Jolma et al.(2013)
TBX20_3
0.862 0.918
TBX20
M03568_2.00
Homo sapiens
DAGGTGTGAWR

YWTCACACCTH
SELEX
Jolma et al.(2013)
TBX20_4
0.862 0.918
TBX20
M03569_2.00
Homo sapiens
AGGTGTKANGKTGTSA

TSACAMCNTMACACCT
SELEX
Jolma et al.(2013)
TBX20_5
0.862 0.918
TBX20
M05813_2.00
Homo sapiens
DAGGTGTKARSGTGTGAA

TTCACACSYTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1
0.862 0.918
TBX20
M05814_2.00
Homo sapiens
NAGGTGTGAAWTTCACACCTN

NAGGTGTGAAWTTCACACCTN
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2
0.862 0.918
TBX20
M05817_2.00
Homo sapiens
DRRGTGTBADVGYGTBAN

NTVACRCBHTVACACYYH
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1
0.862 0.918
TBX20
M05818_2.00
Homo sapiens
WTCACACYTAGGTGTKAM

KTMACACCTARGTGTGAW
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2
0.862 0.918
TBX20
M11385_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX20_05
0.862 0.918
TBX20
M05815_2.00
Homo sapiens
DAGGTGTKAASGYGTKAA

TTMACRCSTTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1
0.862 0.918
TBX20
M05816_2.00
Homo sapiens
DASGTGTGAWWWTCACACCTH

DAGGTGTGAWWWTCACACSTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2
0.862 0.918
TBX20
M05819_2.00
Homo sapiens
DRGGYGTBARVGYGTKAN

NTMACRCBYTVACRCCYH
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1
0.862 0.918
TBX20
M05820_2.00
Homo sapiens
TTMACRCCTAVGTGTGAA

TTCACACBTAGGYGTKAA
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2
0.862 0.918
Tbx20
M00835_2.00
Mus musculus
NRRGTGTBAN

NTVACACYYN
PBM
Weirauch et al.(2013)
pTH3777
0.862 0.912
Tbx20
M09430_2.00
Mus musculus
NDSTGNTGACAGSN

NSCTGTCANCASHN
Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C
0.862 0.912
Tbx20
M09650_2.00
Mus musculus
SCTGTCADCASN

NSTGHTGACAGS
Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636
0.862 0.912
mid
M03994_2.00
Drosophila melanogaster
DAGGTGTKAN

NTMACACCTH
SELEX
Nitta et al.(2015)
mid_1
0.778 0.725
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.742 0.654
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.90.81.1 T-box 111 297

Links

Other T-box family TFs
Other Branchiostoma floridae TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL008337 Aedes aegypti AAEL008337 I 0.804
AALB000416 Anopheles albimanus AALB000416 I 0.789
AARA011014 Anopheles arabiensis AARA011014 I 0.789
AATE013317 Anopheles atroparvus AATE013317 I 0.789
ACOM023916 Anopheles coluzzii ACOM023916 I 0.789
ACUA008697 Anopheles culicifacies ACUA008697 I 0.789
ACYPI008613 Acyrthosiphon pisum ACYPI008613 I 0.797
ADAC004417 Anopheles darlingi ADAC004417 I 0.789
ADIR010890 Anopheles dirus ADIR010890 I 0.789
AEPI001842 Anopheles epiroticus AEPI001842 I 0.789
AFAF008895 Anopheles farauti AFAF008895 I 0.789
AFUN010568 Anopheles funestus AFUN010568 I 0.789
AGAP008563 Anopheles gambiae AGAP008563 I 0.795
AGAP008567 Anopheles gambiae AGAP008567 I 0.789
AGAP008569 Anopheles gambiae AGAP008569 I 0.799
AMAM010638 Anopheles maculatus AMAM010638 I 0.789
AMEC012505 Anopheles melas AMEC012505 I 0.789
AMEC014683 Anopheles melas AMEC014683 I 0.789
AMEM005379 Anopheles merus AMEM005379 I 0.789
AMIN000992 Anopheles minimus AMIN000992 I 0.789
AQUA000256 Anopheles quadriannulatus AQUA000256 I 0.789
ASTEI05184 Anopheles stephensi ASTEI05184 I 0.789
ASTEI05186 Anopheles stephensi ASTEI05186 I 0.795
CGI_10020437 Crassostrea gigas CGI_10020437 I 0.794
Cmyd_10006683 Chelonia mydas Cmyd_10006683 I 0.854
csin100383 Clonorchis sinensis csin100383 I 0.771
D915_09218 Fasciola hepatica D915_09218 I 0.767
D917_05246 Trichinella nativa D917_05246 I 0.745
DAPPUDRAFT_59354 Daphnia pulex DAPPUDRAFT_59354 I 0.787
DAPPUDRAFT_59366 Daphnia pulex DAPPUDRAFT_59366 I 0.806
ECANG7_07504 Echinococcus canadensis ECANG7_07504 I 0.761
EFV54310 Trichinella spiralis EFV54310 I 0.745
EmuJ_000377200 Echinococcus multilocularis EmuJ_000377200 I 0.769
TBX20 Anolis carolinensis ENSACAG00000007473 I 0.862
ENSAMXG00000002328 Astyanax mexicanus ENSAMXG00000002328 I 0.857
TBX20 Bos taurus ENSBTAG00000017541 I 0.860
TBX18 Bos taurus ENSBTAG00000018161 I 0.740
TBX20 Canis familiaris ENSCAFG00000028536 I 0.865
ENSCING00000003391 Ciona intestinalis ENSCING00000003391 N 0.739
tbx20 Ciona intestinalis ENSCING00000005267 I 0.820
TBX20 Callithrix jacchus ENSCJAG00000012232 I 0.862
TBX20 Cavia porcellus ENSCPOG00000015229 I 0.862
ENSCSAG00000014936 Chlorocebus sabaeus ENSCSAG00000014936 I 0.862
tbx20 Danio rerio ENSDARG00000005150 I 0.865
TBX20 Dasypus novemcinctus ENSDNOG00000004142 I 0.862
TBX20 Equus caballus ENSECAG00000018182 I 0.862
TBX20 Erinaceus europaeus ENSEEUG00000010135 I 0.862
TBX20 Echinops telfairi ENSETEG00000012771 I 0.862
ENSFALG00000002727 Ficedula albicollis ENSFALG00000002727 I 0.860
TBX20 Felis catus ENSFCAG00000013004 I 0.862
TBX20 Homo sapiens ENSG00000164532 D 0.862
tbx20 Gasterosteus aculeatus ENSGACG00000012706 I 0.864
ENSGALG00000012151 Gallus gallus ENSGALG00000012151 I 0.862
TBX20 Gorilla gorilla ENSGGOG00000026618 I 0.862
ENSGMOG00000012734 Gadus morhua ENSGMOG00000012734 I 0.865
ENSLACG00000010741 Latimeria chalumnae ENSLACG00000010741 I 0.862
TBX20 Loxodonta africana ENSLAFG00000012790 I 0.862
ENSLOCG00000002483 Lepisosteus oculatus ENSLOCG00000002483 I 0.865
TBX20 Meleagris gallopavo ENSMGAG00000012040 I 0.862
TBX20 Myotis lucifugus ENSMLUG00000015517 I 0.862
TBX20 Macaca mulatta ENSMMUG00000012549 I 0.862
TBX20 Monodelphis domestica ENSMODG00000000085 I 0.862
ENSMPUG00000007865 Mustela putorius furo ENSMPUG00000007865 I 0.862
Tbx20 Mus musculus ENSMUSG00000031965 D 0.862
ENSNLEG00000001606 Nomascus leucogenys ENSNLEG00000001606 I 0.862
ENSOANG00000006968 Ornithorhynchus anatinus ENSOANG00000006968 I 0.862
ENSOARG00000005153 Ovis aries ENSOARG00000005153 I 0.860
ENSOARG00000013317 Ovis aries ENSOARG00000013317 I 0.740
TBX20 Oryctolagus cuniculus ENSOCUG00000007422 I 0.862
TBX20 Otolemur garnettii ENSOGAG00000010338 I 0.862
ENSONIG00000006593 Oreochromis niloticus ENSONIG00000006593 I 0.864
TBX20 Ochotona princeps ENSOPRG00000013626 I 0.862
ENSP00000358677-D1 Bos grunniens ENSP00000358677-D1 I 0.740
ENSP00000386170 Macaca fascicularis ENSP00000386170 I 0.862
ENSP00000386170-D1 Bos grunniens ENSP00000386170-D1 I 0.860
ENSPANG00000007074 Papio anubis ENSPANG00000007074 I 0.862
ENSPFOG00000012859 Poecilia formosa ENSPFOG00000012859 I 0.864
ENSPMAG00000003745 Petromyzon marinus ENSPMAG00000003745 I 0.754
ENSPPYG00000017641 Pongo abelii ENSPPYG00000017641 I 0.862
ENSPSIG00000016149 Pelodiscus sinensis ENSPSIG00000016149 I 0.862
TBX20 Pan troglodytes ENSPTRG00000019076 I 0.862
Tbx18 Rattus norvegicus ENSRNOG00000010685 I 0.740
Tbx20 Rattus norvegicus ENSRNOG00000016181 I 0.862
ENSSHAG00000016356 Sarcophilus harrisii ENSSHAG00000016356 I 0.862
TBX20 Sus scrofa ENSSSCG00000016662 I 0.860
TBX20 Taeniopygia guttata ENSTGUG00000005375 I 0.862
tbx20 Tetraodon nigroviridis ENSTNIG00000005154 I 0.863
tbx20 Takifugu rubripes ENSTRUG00000005667 I 0.864
TBX20 Tursiops truncatus ENSTTRG00000016622 I 0.860
ENSXMAG00000004704 Xiphophorus maculatus ENSXMAG00000004704 I 0.864
estExt_fgenesh2_pg.C_1050030 Branchiostoma floridae estExt_fgenesh2_pg.C_1050030 I 0.747
e_gw.418.20.1 Branchiostoma floridae e_gw.418.20.1 I 0.747
H15 Drosophila melanogaster FBgn0016660 I 0.788
GA19742 Drosophila pseudoobscura FBgn0079738 I 0.778
GF14390 Drosophila ananassae FBgn0091417 I 0.794
GF14392 Drosophila ananassae FBgn0091419 I 0.783
GG25071 Drosophila erecta FBgn0117200 I 0.788
GG25073 Drosophila erecta FBgn0117202 I 0.778
GI17985 Drosophila mojavensis FBgn0140725 I 0.794
GI17986 Drosophila mojavensis FBgn0140726 I 0.778
GL25841 Drosophila persimilis FBgn0163425 I 0.791
GM18547 Drosophila sechellia FBgn0173454 I 0.793
GM18548 Drosophila sechellia FBgn0173455 I 0.778
GD23340 Drosophila simulans FBgn0194726 I 0.793
GD23341 Drosophila simulans FBgn0194727 I 0.778
GJ19565 Drosophila virilis FBgn0206707 I 0.794
GJ19568 Drosophila virilis FBgn0206710 I 0.778
GK15084 Drosophila willistoni FBgn0217089 I 0.793
GK15086 Drosophila willistoni FBgn0217091 I 0.778
GE25406 Drosophila yakuba FBgn0242479 I 0.788
GE25417 Drosophila yakuba FBgn0242487 I 0.778
GA25466 Drosophila pseudoobscura FBgn0246844 I 0.791
mid Drosophila melanogaster FBgn0261963 D 0.778
GB45715 Apis mellifera GB45715 I 0.809
HDID_0000627201 Hymenolepis diminuta HDID_0000627201 I 0.769
HelroG134299 Helobdella robusta HelroG134299 I 0.763
HelroG98030 Helobdella robusta HelroG98030 I 0.786
HMEL012426 Heliconius melpomene HMEL012426 I 0.804
HmN_000695600 Hymenolepis microstoma HmN_000695600 I 0.769
HNAJ_0000047101 Hymenolepis nana HNAJ_0000047101 I 0.768
L798_07505 Zootermopsis nevadensis L798_07505 I 0.802
LCUP000433 Lucilia cuprina LCUP000433 I 0.778
LotgiG129083 Lottia gigantea LotgiG129083 I 0.750
LotgiG179359 Lottia gigantea LotgiG179359 I 0.770
MCOS_0000012101 Mesocestoides corti MCOS_0000012101 I 0.764
MDOA009961 Musca domestica MDOA009961 I 0.807
MDOA010319 Musca domestica MDOA010319 I 0.778
Myotis_brandtii_Tbx20_10020109 Myotis brandtii Myotis_brandtii_Tbx20_10020109 I 0.862
NV17864 Nasonia vitripennis NV17864 I 0.806
NV17866 Nasonia vitripennis NV17866 I 0.796
Ocbimv22004458m.g Octopus bimaculoides Ocbimv22004458m.g I 0.784
Ogr18070 Ophisaurus gracilis Ogr18070 I 0.855
Pvit_04171 Pogona vitticeps Pvit_04171 I 0.862
Sakowv30012255m.g Saccoglossus kowalevskii Sakowv30012255m.g I 0.765
Sakowv30029504m.g Saccoglossus kowalevskii Sakowv30029504m.g I 0.834
Sjc_0040480 Schistosoma japonicum Sjc_0040480 I 0.774
SMAR008438 Strigamia maritima SMAR008438 I 0.798
SMAR015389 Strigamia maritima SMAR015389 I 0.798
Smp_003900 Schistosoma mansoni Smp_003900 I 0.776
SMU15033270 Schmidtea mediterranea SMU15033270 I 0.762
T265_12717 Opisthorchis viverrini T265_12717 I 0.772
TASK_0000456901 Taenia asiatica TASK_0000456901 I 0.742
TC014296 Tribolium castaneum TC014296 I 0.753
tetur32g01390 Tetranychus urticae tetur32g01390 I 0.782
tetur32g01430 Tetranychus urticae tetur32g01430 I 0.782
TMUE_s0080002600 Trichuris muris TMUE_s0080002600 I 0.752
TTRE_0000323501 Trichuris trichiura TTRE_0000323501 I 0.752
tbx20 Xenopus tropicalis XB-GENE-487334 I 0.872
tbx20.L Xenopus laevis XB-GENE-865696 I 0.872
XP_001195863 Strongylocentrotus purpuratus XP_001195863 D 0.742