CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30001714m.g
(
Saccoglossus kowalevskii
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00907 (T-box)
IPR001699
Sakowv30001714m.g
T341194_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbx1
M00832_2.00
Mus musculus
NRGTGTGAANN
NNTTCACACYN
PBM
Weirauch et al.(2013)
pTH3822
0.812
0.831
TBX1
M03570_2.00
Homo sapiens
ARGTGTKAAAWHARGTGTGA
TCACACYTDWTTTMACACYT
SELEX
Jolma et al.(2013)
TBX1_1
0.812
0.831
TBX1
M03571_2.00
Homo sapiens
AGGTGTGAWWTTCACACCT
AGGTGTGAAWWTCACACCT
SELEX
Jolma et al.(2013)
TBX1_2
0.812
0.831
TBX1
M03572_2.00
Homo sapiens
AGGTGTGA
TCACACCT
SELEX
Jolma et al.(2013)
TBX1_3
0.812
0.831
TBX1
M03573_2.00
Homo sapiens
YYTCACACMTYWRAGGTGTGAAA
TTTCACACCTYWRAKGTGTGARR
SELEX
Jolma et al.(2013)
TBX1_4
0.812
0.831
TBX1
M03574_2.00
Homo sapiens
YTCACACCTDKAGGTGTGAA
TTCACACCTMHAGGTGTGAR
SELEX
Jolma et al.(2013)
TBX1_5
0.812
0.831
TBX1
M05821_2.00
Homo sapiens
BDRGGTGTGARV
BYTCACACCYHV
SELEX
Yin et al.(2017)
TBX1_eDBD_HT-SELEX
0.812
0.831
Tbx1
M11386_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX1_07
0.812
0.831
TBX1
M05822_2.00
Homo sapiens
DNWGGTGTGARN
NYTCACACCWNH
SELEX
Yin et al.(2017)
TBX1_eDBD_Methyl-HT-SELEX
0.812
0.831
org-1
M03988_2.00
Drosophila melanogaster
DRGTGTBAD
HTVACACYH
SELEX
Nitta et al.(2015)
org-1_1
0.748
0.742
org-1
M03989_2.00
Drosophila melanogaster
TRACACYTARGTGTGA
TCACACYTARGTGTYA
SELEX
Nitta et al.(2015)
org-1_2
0.748
0.742
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23927971_peptide
T-box
1
182
MKGLWDEFHVLGTEMIVTKSGRRMFPTFQVKIRGMDPMAEYILMMDFVPVDSKRYRYAFHSSSWLVAGQGDPEMPGRIHVHPDSPARGSIWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVHVSGRKDPENAPERDFNTFLFSETQFTAVTAYQNHRITQLKIASNPFAKGFRD
23927972_peptide
T-box
1
109
MPGRIHVHPDSPARGSIWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVHVSGRKDPENAPERDFNTFLFSETQFTAVTAYQNHRITQLKIASNPFAKGFRD
Links
Other
T-box
family TFs
Other
Saccoglossus kowalevskii
TFs
165 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Brh_R005675
Buceros rhinoceros
Brh_R005675
N
0.866
fgenesh2_kg.scaffold_118000001
Branchiostoma floridae
fgenesh2_kg.scaffold_118000001
I
0.859
ENSPPYG00000011585
Pongo abelii
ENSPPYG00000011585
N
0.855
ENSCSAVG00000000786
Ciona savignyi
ENSCSAVG00000000786
I
0.845
SMAR009230
Strigamia maritima
SMAR009230
I
0.843
ENSMPUG00000003900
Mustela putorius furo
ENSMPUG00000003900
I
0.834
LDEC008541
Leptinotarsa decemlineata
LDEC008541
I
0.825
LotgiG104372
Lottia gigantea
LotgiG104372
I
0.825
ENSTRUG00000007811
Takifugu rubripes
ENSTRUG00000007811
N
0.824
TBX10
Monodelphis domestica
ENSMODG00000021334
I
0.821
CapteG226618
Capitella teleta
CapteG226618
I
0.818
YQE_10853
Dendroctonus ponderosae
YQE_10853
I
0.817
TC015327
Tribolium castaneum
TC015327
I
0.816
ENSGMOG00000018613
Gadus morhua
ENSGMOG00000018613
I
0.814
ENSFALG00000008041
Ficedula albicollis
ENSFALG00000008041
I
0.814
TBX10
Procavia capensis
ENSPCAG00000009585
I
0.814
tbx1
Oryzias latipes
ENSORLG00000015256
I
0.814
ENSLACG00000016333
Latimeria chalumnae
ENSLACG00000016333
I
0.814
ENSPFOG00000009540
Poecilia formosa
ENSPFOG00000009540
I
0.814
ENSONIG00000015827
Oreochromis niloticus
ENSONIG00000015827
I
0.814
tbx1
Danio rerio
ENSDARG00000031891
I
0.814
TBX1
Monodelphis domestica
ENSMODG00000021176
I
0.814
tbx1
Tetraodon nigroviridis
ENSTNIG00000016767
I
0.814
Pvit_15846
Pogona vitticeps
Pvit_15846
I
0.814
tbx1
Xenopus tropicalis
XB-GENE-478084
I
0.814
tbx1.L
Xenopus laevis
XB-GENE-478088
I
0.814
tbx1.S
Xenopus laevis
XB-GENE-6254396
I
0.814
ENSPFOG00000009621
Poecilia formosa
ENSPFOG00000009621
I
0.814
tbx1
Takifugu rubripes
ENSTRUG00000014017
I
0.814
TBX1
Taeniopygia guttata
ENSTGUG00000008395
I
0.814
tbx1
Gasterosteus aculeatus
ENSGACG00000013057
I
0.814
ENSMEUG00000011624
Macropus eugenii
ENSMEUG00000011624
I
0.814
ENSAMXG00000020444
Astyanax mexicanus
ENSAMXG00000020444
I
0.814
TBX1
Loxodonta africana
ENSLAFG00000021555
I
0.812
ENSGGOG00000009181
Gorilla gorilla
ENSGGOG00000009181
I
0.812
Tbx1
Rattus norvegicus
ENSRNOG00000001892
I
0.812
ENSP00000331791-D2
Bos grunniens
ENSP00000331791-D2
I
0.812
ENSPANG00000015763
Papio anubis
ENSPANG00000015763
I
0.812
TBX1
Otolemur garnettii
ENSOGAG00000003596
I
0.812
Tbx1
Mus musculus
ENSMUSG00000009097
D
0.812
ENSSTOG00000004505
Ictidomys tridecemlineatus
ENSSTOG00000004505
I
0.812
ENSCSAG00000011818
Chlorocebus sabaeus
ENSCSAG00000011818
I
0.812
TBX1
Callithrix jacchus
ENSCJAG00000014591
I
0.812
ENSFCAG00000005446
Felis catus
ENSFCAG00000005446
I
0.812
TBX1
Dasypus novemcinctus
ENSDNOG00000035422
I
0.812
TBX1
Homo sapiens
ENSG00000184058
D
0.812
NV11904
Nasonia vitripennis
NV11904
I
0.811
DAPPUDRAFT_3881
Daphnia pulex
DAPPUDRAFT_3881
I
0.810
Hsal_04471--XP_624689.2_APIME
Harpegnathos saltator
Hsal_04471--XP_624689.2_APIME
I
0.810
Cflo_09868--XP_624689.2_APIME
Camponotus floridanus
Cflo_09868--XP_624689.2_APIME
I
0.810
ENSMEUG00000007568
Macropus eugenii
ENSMEUG00000007568
I
0.810
ACYPI001903
Acyrthosiphon pisum
ACYPI001903
I
0.808
CJA37253
Caenorhabditis japonica
CJA37253
N
0.805
TBX10
Gorilla gorilla
ENSGGOG00000011961
I
0.802
ENSCSAG00000008726
Chlorocebus sabaeus
ENSCSAG00000008726
I
0.802
TBX10
Pan troglodytes
ENSPTRG00000003972
I
0.802
PHUM607490
Pediculus humanus
PHUM607490
I
0.802
L798_01101
Zootermopsis nevadensis
L798_01101
I
0.802
TBX10
Canis familiaris
ENSCAFG00000011264
I
0.802
ENSAMEG00000001098
Ailuropoda melanoleuca
ENSAMEG00000001098
I
0.802
ENSSTOG00000011629
Ictidomys tridecemlineatus
ENSSTOG00000011629
I
0.802
GB55445
Apis mellifera
GB55445
I
0.802
Tbx10
Rattus norvegicus
ENSRNOG00000017944
I
0.802
TBX10
Pteropus vampyrus
ENSPVAG00000008592
I
0.802
ENSPANG00000006501
Papio anubis
ENSPANG00000006501
I
0.802
Tbx10
Dipodomys ordii
ENSDORG00000010070
I
0.802
Myotis_brandtii_Tbx10_10030825
Myotis brandtii
Myotis_brandtii_Tbx10_10030825
I
0.802
ENSMMUG00000018529
Macaca mulatta
ENSMMUG00000018529
I
0.802
TBX10
Felis catus
ENSFCAG00000001760
I
0.802
TBX10
Homo sapiens
ENSG00000167800
I
0.802
Tbx10
Mus musculus
ENSMUSG00000037477
I
0.802
ENSMPUG00000004076
Mustela putorius furo
ENSMPUG00000004076
I
0.802
ENSBTAP00000015683-D1
Bos grunniens
ENSBTAP00000015683-D1
I
0.802
ENSP00000335191
Macaca fascicularis
ENSP00000335191
I
0.802
TBX10
Otolemur garnettii
ENSOGAG00000000784
I
0.798
ISCW003117
Ixodes scapularis
ISCW003117
N
0.796
Alligator_sinensis_CCG022145.1
Alligator sinensis
Alligator_sinensis_CCG022145.1
I
0.793
CGI_10008753
Crassostrea gigas
CGI_10008753
I
0.792
tetur04g00890
Tetranychus urticae
tetur04g00890
I
0.790
ANCCAN_02907
Ancylostoma caninum
ANCCAN_02907
N
0.788
MDOA001403
Musca domestica
MDOA001403
I
0.787
NEMVEDRAFT_v1g214571
Nematostella vectensis
NEMVEDRAFT_v1g214571
I
0.779
ENSACAG00000008549
Anolis carolinensis
ENSACAG00000008549
I
0.777
LLOJ005386
Lutzomyia longipalpis
LLOJ005386
I
0.777
Myotis_brandtii_Tbx1_10021844
Myotis brandtii
Myotis_brandtii_Tbx1_10021844
I
0.775
Pvit_16222
Pogona vitticeps
Pvit_16222
I
0.774
Ogr08509
Ophisaurus gracilis
Ogr08509
I
0.774
TBX10
Bos taurus
ENSBTAG00000011816
I
0.774
HMEL015536
Heliconius melpomene
HMEL015536
I
0.772
KGM_08622
Danaus plexippus
KGM_08622
I
0.772
Gfo_R006963
Geospiza fortis
Gfo_R006963
N
0.772
ENSTSYG00000004047
Tarsius syrichta
ENSTSYG00000004047
N
0.772
ENSLACG00000004994
Latimeria chalumnae
ENSLACG00000004994
I
0.772
Aan_R010744
Calypte anna
Aan_R010744
I
0.771
ENSGALG00000003599
Gallus gallus
ENSGALG00000003599
I
0.771
ENSMGAG00000004357
Meleagris gallopavo
ENSMGAG00000004357
I
0.771
ENSTGUG00000007382
Taeniopygia guttata
ENSTGUG00000007382
I
0.770
ENSSHAG00000005122
Sarcophilus harrisii
ENSSHAG00000005122
N
0.767
tbx5.S
Xenopus laevis
XB-GENE-6253071
N
0.766
ENSOARG00000013751
Ovis aries
ENSOARG00000013751
I
0.765
NEMVEDRAFT_v1g214570
Nematostella vectensis
NEMVEDRAFT_v1g214570
I
0.765
ENSPSIG00000012149
Pelodiscus sinensis
ENSPSIG00000012149
N
0.765
TBR1
Homo sapiens
ENSG00000136535
D
0.763
ENSTGUG00000006709
Taeniopygia guttata
ENSTGUG00000006709
N
0.763
ENSACAG00000011860
Anolis carolinensis
ENSACAG00000011860
N
0.763
ENSMICG00000005972
Microcebus murinus
ENSMICG00000005972
I
0.763
TBR1
Callithrix jacchus
ENSCJAG00000005603
I
0.763
BGIBMGA013132
Bombyx mori
BGIBMGA013132
I
0.761
Afo_R014491
Aptenodytes forsteri
Afo_R014491
N
0.760
TBX1
Cavia porcellus
ENSCPOG00000012532
N
0.759
ENSXMAG00000002370
Xiphophorus maculatus
ENSXMAG00000002370
N
0.759
ENSAMEG00000011544
Ailuropoda melanoleuca
ENSAMEG00000011544
N
0.759
Aan_R008227
Calypte anna
Aan_R008227
N
0.759
ENSPSIG00000008075
Pelodiscus sinensis
ENSPSIG00000008075
N
0.759
TBX1
Oryctolagus cuniculus
ENSOCUG00000014466
N
0.759
ENSECAG00000004398
Equus caballus
ENSECAG00000004398
N
0.759
TBX1
Canis familiaris
ENSCAFG00000014503
N
0.759
ENSTNIG00000014352
Tetraodon nigroviridis
ENSTNIG00000014352
I
0.758
Tbr1
Mus musculus
ENSMUSG00000035033
D
0.757
CpipJ_CPIJ007784
Culex pipiens
CpipJ_CPIJ007784
I
0.757
AAEL018165
Aedes aegypti
AAEL018165
I
0.757
CPIJ007784
Culex quinquefasciatus
CPIJ007784
I
0.757
CLEC006885
Cimex lectularius
CLEC006885
I
0.757
ENSOANG00000028644
Ornithorhynchus anatinus
ENSOANG00000028644
N
0.755
L893_g18550
Steinernema glaseri
L893_g18550
N
0.755
ASIS010497
Anopheles sinensis
ASIS010497
I
0.755
AFUN001113
Anopheles funestus
AFUN001113
I
0.755
AFAF008331
Anopheles farauti
AFAF008331
I
0.755
AMAM012836
Anopheles maculatus
AMAM012836
I
0.755
AMEC007874
Anopheles melas
AMEC007874
I
0.755
AMEM018425
Anopheles merus
AMEM018425
I
0.755
AEPI001144
Anopheles epiroticus
AEPI001144
I
0.755
ADIR010556
Anopheles dirus
ADIR010556
I
0.755
AALB002686
Anopheles albimanus
AALB002686
I
0.755
AQUA006531
Anopheles quadriannulatus
AQUA006531
I
0.755
AARA001806
Anopheles arabiensis
AARA001806
I
0.755
AATE015045
Anopheles atroparvus
AATE015045
I
0.755
AMIN000536
Anopheles minimus
AMIN000536
I
0.755
ACUA026816
Anopheles culicifacies
ACUA026816
I
0.755
ENSECAG00000018160
Equus caballus
ENSECAG00000018160
N
0.753
tbx4.L
Xenopus laevis
XB-GENE-951383
N
0.749
TBX1
Procavia capensis
ENSPCAG00000010176
I
0.749
GJ18625
Drosophila virilis
FBgn0205781
I
0.748
GH12234
Drosophila grimshawi
FBgn0119713
I
0.748
GI15769
Drosophila mojavensis
FBgn0138518
I
0.748
GF22584
Drosophila ananassae
FBgn0099578
I
0.748
GA10837
Drosophila pseudoobscura
FBgn0070893
I
0.748
org-1
Drosophila melanogaster
FBgn0021767
D
0.748
GL20248
Drosophila persimilis
FBgn0157843
I
0.748
GG19051
Drosophila erecta
FBgn0111257
I
0.748
GM21356
Drosophila sechellia
FBgn0176237
I
0.748
GE17455
Drosophila yakuba
FBgn0234921
I
0.748
GK19893
Drosophila willistoni
FBgn0221891
I
0.748
ENSPFOG00000007309
Poecilia formosa
ENSPFOG00000007309
I
0.745
ENSCJAG00000000826
Callithrix jacchus
ENSCJAG00000000826
N
0.743
ENSETEG00000009362
Echinops telfairi
ENSETEG00000009362
N
0.742
ENSVPAG00000011101
Vicugna pacos
ENSVPAG00000011101
I
0.741
HelroG89689
Helobdella robusta
HelroG89689
N
0.741
ENSETEG00000007920
Echinops telfairi
ENSETEG00000007920
N
0.739
SINV16738
Solenopsis invicta
SINV16738
N
0.739
SPU_006150
Strongylocentrotus purpuratus
SPU_006150
N
0.738
NBR_0001696801
Nippostrongylus brasiliensis
NBR_0001696801
N
0.738
CPIJ000433
Culex quinquefasciatus
CPIJ000433
N
0.735
TBX5
Callithrix jacchus
ENSCJAG00000009744
I
0.735
CpipJ_CPIJ000433
Culex pipiens
CpipJ_CPIJ000433
N
0.735