CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LCUP005945
(
Lucilia cuprina
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00907 (T-box)
IPR001699
LCUP005945
T341229_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Doc2
M03992_2.00
Drosophila melanogaster
DRGGTGTBAN
NTVACACCYH
SELEX
Nitta et al.(2015)
Doc2_1
0.883
0.906
Doc2
M03993_2.00
Drosophila melanogaster
NAGGTGTBAN
NTVACACCTN
SELEX
Nitta et al.(2015)
Doc2_2
0.883
0.906
Doc2
M06454_2.00
Drosophila melanogaster
ARGYGTGAA
TTCACRCYT
B1H
Zhu et al.(2011)
Doc2_SANGER_5_FBgn0035956
0.883
0.906
Doc3
M03990_2.00
Drosophila melanogaster
NRGGTGTBAD
HTVACACCYN
SELEX
Nitta et al.(2015)
Doc3_1
0.873
0.901
Doc3
M03991_2.00
Drosophila melanogaster
DAGGTGTBAN
NTVACACCTH
SELEX
Nitta et al.(2015)
Doc3_2
0.873
0.901
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN
NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.735
0.608
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN
NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.735
0.608
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LCUP005945-PA
T-box
61
241
AKLENNDLWQQFHKIGTEMIITKSGRRMFPSMRVSLKGLEEESQYCVLIEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPDSPATGSHWQAQPILFNKVKLTNNTLDNNGHIVLASMHKYQPRIHVIRTNDLAQIPWAPQQAFVFPETEFVAVTAYQNDRITKLKIDNNPFAKGFRE
Links
Other
T-box
family TFs
Other
Lucilia cuprina
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy