tbx1.L (Xenopus laevis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 XB-GENE-478088 T341275_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbx1
M00832_2.00
Mus musculus
NRGTGTGAANN

NNTTCACACYN
PBM
Weirauch et al.(2013)
pTH3822
0.918 0.995
TBX1
M03570_2.00
Homo sapiens
ARGTGTKAAAWHARGTGTGA

TCACACYTDWTTTMACACYT
SELEX
Jolma et al.(2013)
TBX1_1
0.918 0.995
TBX1
M03571_2.00
Homo sapiens
AGGTGTGAWWTTCACACCT

AGGTGTGAAWWTCACACCT
SELEX
Jolma et al.(2013)
TBX1_2
0.918 0.995
TBX1
M03572_2.00
Homo sapiens
AGGTGTGA

TCACACCT
SELEX
Jolma et al.(2013)
TBX1_3
0.918 0.995
TBX1
M03573_2.00
Homo sapiens
YYTCACACMTYWRAGGTGTGAAA

TTTCACACCTYWRAKGTGTGARR
SELEX
Jolma et al.(2013)
TBX1_4
0.918 0.995
TBX1
M03574_2.00
Homo sapiens
YTCACACCTDKAGGTGTGAA

TTCACACCTMHAGGTGTGAR
SELEX
Jolma et al.(2013)
TBX1_5
0.918 0.995
TBX1
M05821_2.00
Homo sapiens
BDRGGTGTGARV

BYTCACACCYHV
SELEX
Yin et al.(2017)
TBX1_eDBD_HT-SELEX
0.918 0.995
Tbx1
M11386_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX1_07
0.918 0.995
TBX1
M05822_2.00
Homo sapiens
DNWGGTGTGARN

NYTCACACCWNH
SELEX
Yin et al.(2017)
TBX1_eDBD_Methyl-HT-SELEX
0.918 0.995
org-1
M03988_2.00
Drosophila melanogaster
DRGTGTBAD

HTVACACYH
SELEX
Nitta et al.(2015)
org-1_1
0.741 0.731
org-1
M03989_2.00
Drosophila melanogaster
TRACACYTARGTGTGA

TCACACYTARGTGTYA
SELEX
Nitta et al.(2015)
org-1_2
0.741 0.731
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI08603 T-box 112 297

Links

Other T-box family TFs
Other Xenopus laevis TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL018165 Aedes aegypti AAEL018165 I 0.744
AALB002686 Anopheles albimanus AALB002686 I 0.746
Aan_R010744 Calypte anna Aan_R010744 I 0.822
AARA001806 Anopheles arabiensis AARA001806 I 0.746
AATE015045 Anopheles atroparvus AATE015045 I 0.746
ACUA026816 Anopheles culicifacies ACUA026816 I 0.746
ACYPI001903 Acyrthosiphon pisum ACYPI001903 I 0.860
ADIR010556 Anopheles dirus ADIR010556 I 0.746
AEPI001144 Anopheles epiroticus AEPI001144 I 0.746
AFAF008331 Anopheles farauti AFAF008331 I 0.746
AFUN001113 Anopheles funestus AFUN001113 I 0.746
Alligator_sinensis_CCG022145.1 Alligator sinensis Alligator_sinensis_CCG022145.1 I 0.800
AMAM012836 Anopheles maculatus AMAM012836 I 0.746
AMEC007874 Anopheles melas AMEC007874 I 0.746
AMEM018425 Anopheles merus AMEM018425 I 0.746
AMIN000536 Anopheles minimus AMIN000536 I 0.746
AQUA006531 Anopheles quadriannulatus AQUA006531 I 0.746
ASIS010497 Anopheles sinensis ASIS010497 I 0.746
BGIBMGA013132 Bombyx mori BGIBMGA013132 I 0.781
CapteG226618 Capitella teleta CapteG226618 I 0.848
Cflo_09868--XP_624689.2_APIME Camponotus floridanus Cflo_09868--XP_624689.2_APIME I 0.806
CGI_10008753 Crassostrea gigas CGI_10008753 I 0.830
CLEC006885 Cimex lectularius CLEC006885 I 0.792
CPIJ007784 Culex quinquefasciatus CPIJ007784 I 0.744
CpipJ_CPIJ007784 Culex pipiens CpipJ_CPIJ007784 I 0.744
DAPPUDRAFT_3881 Daphnia pulex DAPPUDRAFT_3881 I 0.869
ENSACAG00000008549 Anolis carolinensis ENSACAG00000008549 I 0.836
ENSAMEG00000001098 Ailuropoda melanoleuca ENSAMEG00000001098 I 0.869
ENSAMXG00000020444 Astyanax mexicanus ENSAMXG00000020444 I 0.920
ENSBTAP00000015683-D1 Bos grunniens ENSBTAP00000015683-D1 I 0.869
ENSCSAG00000008726 Chlorocebus sabaeus ENSCSAG00000008726 I 0.860
ENSCSAG00000011818 Chlorocebus sabaeus ENSCSAG00000011818 I 0.918
ENSCSAVG00000000786 Ciona savignyi ENSCSAVG00000000786 I 0.809
ENSFALG00000008041 Ficedula albicollis ENSFALG00000008041 I 0.920
ENSFCAG00000005446 Felis catus ENSFCAG00000005446 I 0.918
ENSGALG00000003599 Gallus gallus ENSGALG00000003599 I 0.822
ENSGGOG00000009181 Gorilla gorilla ENSGGOG00000009181 I 0.918
ENSGMOG00000018613 Gadus morhua ENSGMOG00000018613 I 0.920
ENSLACG00000004994 Latimeria chalumnae ENSLACG00000004994 I 0.850
ENSLACG00000016333 Latimeria chalumnae ENSLACG00000016333 I 0.920
ENSLOCG00000002370 Lepisosteus oculatus ENSLOCG00000002370 I 0.760
ENSMEUG00000007568 Macropus eugenii ENSMEUG00000007568 I 0.860
ENSMEUG00000011624 Macropus eugenii ENSMEUG00000011624 I 0.920
ENSMGAG00000004357 Meleagris gallopavo ENSMGAG00000004357 I 0.822
ENSMMUG00000018529 Macaca mulatta ENSMMUG00000018529 I 0.860
ENSMPUG00000003900 Mustela putorius furo ENSMPUG00000003900 I 0.896
ENSMPUG00000004076 Mustela putorius furo ENSMPUG00000004076 I 0.869
ENSOARG00000013751 Ovis aries ENSOARG00000013751 I 0.825
ENSONIG00000015827 Oreochromis niloticus ENSONIG00000015827 I 0.920
ENSP00000331791-D2 Bos grunniens ENSP00000331791-D2 I 0.918
ENSP00000335191 Macaca fascicularis ENSP00000335191 I 0.860
ENSPANG00000006501 Papio anubis ENSPANG00000006501 I 0.860
ENSPANG00000015763 Papio anubis ENSPANG00000015763 I 0.918
ENSPFOG00000007309 Poecilia formosa ENSPFOG00000007309 I 0.762
ENSPFOG00000009540 Poecilia formosa ENSPFOG00000009540 I 0.920
ENSPFOG00000009621 Poecilia formosa ENSPFOG00000009621 I 0.920
ENSSTOG00000004505 Ictidomys tridecemlineatus ENSSTOG00000004505 I 0.918
ENSSTOG00000011629 Ictidomys tridecemlineatus ENSSTOG00000011629 I 0.860
ENSTGUG00000007382 Taeniopygia guttata ENSTGUG00000007382 I 0.821
ENSTNIG00000014352 Tetraodon nigroviridis ENSTNIG00000014352 I 0.739
fgenesh2_kg.scaffold_118000001 Branchiostoma floridae fgenesh2_kg.scaffold_118000001 I 0.861
GA10837 Drosophila pseudoobscura FBgn0070893 I 0.741
GB55445 Apis mellifera GB55445 I 0.815
GE17455 Drosophila yakuba FBgn0234921 I 0.741
GF22584 Drosophila ananassae FBgn0099578 I 0.741
Gfo_R011877 Geospiza fortis Gfo_R011877 I 0.779
GG19051 Drosophila erecta FBgn0111257 I 0.741
GH12234 Drosophila grimshawi FBgn0119713 I 0.741
GI15769 Drosophila mojavensis FBgn0138518 I 0.741
GJ18625 Drosophila virilis FBgn0205781 I 0.741
GK19893 Drosophila willistoni FBgn0221891 I 0.741
GL20248 Drosophila persimilis FBgn0157843 I 0.741
GM21356 Drosophila sechellia FBgn0176237 I 0.741
HMEL015536 Heliconius melpomene HMEL015536 I 0.787
Hsal_04471--XP_624689.2_APIME Harpegnathos saltator Hsal_04471--XP_624689.2_APIME I 0.806
KGM_08622 Danaus plexippus KGM_08622 I 0.787
L798_01101 Zootermopsis nevadensis L798_01101 I 0.859
LDEC008541 Leptinotarsa decemlineata LDEC008541 I 0.831
LLOJ005386 Lutzomyia longipalpis LLOJ005386 I 0.761
LotgiG104372 Lottia gigantea LotgiG104372 I 0.844
MDOA001403 Musca domestica MDOA001403 I 0.770
Myotis_brandtii_Tbx10_10030825 Myotis brandtii Myotis_brandtii_Tbx10_10030825 I 0.869
Myotis_brandtii_Tbx1_10021844 Myotis brandtii Myotis_brandtii_Tbx1_10021844 I 0.881
NEMVEDRAFT_v1g214570 Nematostella vectensis NEMVEDRAFT_v1g214570 I 0.735
NEMVEDRAFT_v1g214571 Nematostella vectensis NEMVEDRAFT_v1g214571 I 0.772
NV11904 Nasonia vitripennis NV11904 I 0.804
Ogr08509 Ophisaurus gracilis Ogr08509 I 0.832
org-1 Drosophila melanogaster FBgn0021767 D 0.741
PHUM607490 Pediculus humanus PHUM607490 I 0.859
Pvit_15846 Pogona vitticeps Pvit_15846 I 0.920
Pvit_16222 Pogona vitticeps Pvit_16222 I 0.832
Sakowv30001714m.g Saccoglossus kowalevskii Sakowv30001714m.g I 0.814
SMAR009230 Strigamia maritima SMAR009230 I 0.869
tbx1 Xenopus tropicalis XB-GENE-478084 I 0.920
TBX1 Homo sapiens ENSG00000184058 D 0.918
TBX1 Loxodonta africana ENSLAFG00000021555 I 0.918
TBX1 Dasypus novemcinctus ENSDNOG00000035422 I 0.918
tbx1 Gasterosteus aculeatus ENSGACG00000013057 I 0.920
TBX1 Monodelphis domestica ENSMODG00000021176 I 0.920
tbx1 Takifugu rubripes ENSTRUG00000014017 I 0.920
tbx1 Tetraodon nigroviridis ENSTNIG00000016767 I 0.920
tbx1 Oryzias latipes ENSORLG00000015256 I 0.920
Tbx1 Rattus norvegicus ENSRNOG00000001892 I 0.918
Tbx1 Mus musculus ENSMUSG00000009097 D 0.918
TBX1 Callithrix jacchus ENSCJAG00000014591 I 0.918
TBX1 Otolemur garnettii ENSOGAG00000003596 I 0.916
tbx1 Danio rerio ENSDARG00000031891 I 0.920
TBX1 Procavia capensis ENSPCAG00000010176 I 0.855
TBX1 Taeniopygia guttata ENSTGUG00000008395 I 0.920
tbx1.S Xenopus laevis XB-GENE-6254396 I 0.920
TBX10 Felis catus ENSFCAG00000001760 I 0.869
Tbx10 Dipodomys ordii ENSDORG00000010070 I 0.860
TBX10 Homo sapiens ENSG00000167800 I 0.860
TBX10 Canis familiaris ENSCAFG00000011264 I 0.869
TBX10 Bos taurus ENSBTAG00000011816 I 0.842
TBX10 Gorilla gorilla ENSGGOG00000011961 I 0.860
TBX10 Monodelphis domestica ENSMODG00000021334 I 0.844
TBX10 Pteropus vampyrus ENSPVAG00000008592 I 0.869
TBX10 Pan troglodytes ENSPTRG00000003972 I 0.847
TBX10 Otolemur garnettii ENSOGAG00000000784 I 0.857
Tbx10 Mus musculus ENSMUSG00000037477 I 0.860
TBX10 Procavia capensis ENSPCAG00000009585 I 0.855
Tbx10 Rattus norvegicus ENSRNOG00000017944 I 0.860
TC015327 Tribolium castaneum TC015327 I 0.831
tetur04g00890 Tetranychus urticae tetur04g00890 I 0.828
YQE_10853 Dendroctonus ponderosae YQE_10853 I 0.845