tbx21 (Xenopus tropicalis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 XB-GENE-479103 T341277_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbr1
M01028_2.00
Mus musculus
DTVRCAMNYH

DRNKTGYBAH
PBM
SebePedros et al.(2013)
pTH2659
0.843 0.751
TBR1
M03560_2.00
Homo sapiens
AGGTGTGAAN

NTTCACACCT
SELEX
Jolma et al.(2013)
TBR1_1
0.843 0.751
TBR1
M03561_2.00
Homo sapiens
RAGGTGTGAAH

DTTCACACCTY
SELEX
Jolma et al.(2013)
TBR1_2
0.843 0.751
Eomes
M00215_2.00
Mus musculus
RDGTGYBANN

NNTVRCACHY
PBM
Badis et al.(2009)
Eomes_0921
0.815 0.724
EOMES
M03563_2.00
Homo sapiens
DAGGTGTGAWNNN

NNNWTCACACCTH
SELEX
Jolma et al.(2013)
EOMES_1
0.815 0.718
EOMES
M03564_2.00
Homo sapiens
TVACACNTNNNDRNGTGTGA

TCACACNYHNNNANGTGTBA
SELEX
Jolma et al.(2013)
EOMES_2
0.815 0.718
EOMES
M02752_2.00
Homo sapiens
AGGTGTGAW

WTCACACCT
SELEX
Jolma et al.(2010)
EOMES_monomer
0.815 0.718
EOMES
M05807_2.00
Homo sapiens
DAGGTGTGAN

NTCACACCTH
SELEX
Yin et al.(2017)
EOMES_eDBD_HT-SELEX
0.815 0.718
EOMES
M09647_2.00
Homo sapiens
ARGTGWKAAN

NTTMWCACYT
Misc
Heinz et al.(2010)
H9-Eomes_GSE26097
0.815 0.718
EOMES
M05808_2.00
Homo sapiens
NABGTGYKAH

DTMRCACVTN
SELEX
Yin et al.(2017)
EOMES_eDBD_Methyl-HT-SELEX
0.815 0.718
A0A075Q982_PATMI
M00734_2.00
Patiria miniata
NAGGTGTBAN

NTVACACCTN
PBM
Cheatle-Jarvela et al.(2014)
PmTbr
0.770 0.597
TBX21
M03546_2.00
Homo sapiens
GGTGTGAHDTMACACY

RGTGTKAHDTCACACC
SELEX
Jolma et al.(2013)
TBX21_1
0.756 0.751
TBX21
M03547_2.00
Homo sapiens
DAGGTGTGAW

WTCACACCTH
SELEX
Jolma et al.(2013)
TBX21_2
0.756 0.751
TBX21
M03548_2.00
Homo sapiens
TMACACYTNNDAGGTGTGA

TCACACCTHNNARGTGTKA
SELEX
Jolma et al.(2013)
TBX21_3
0.756 0.751
TBX21
M03549_2.00
Homo sapiens
GGTGTGAWATCACACC

GGTGTGATWTCACACC
SELEX
Jolma et al.(2013)
TBX21_4
0.756 0.751
TBX21
M03550_2.00
Homo sapiens
DAGGTGTGAW

WTCACACCTH
SELEX
Jolma et al.(2013)
TBX21_5
0.756 0.751
TBX21
M03551_2.00
Homo sapiens
TSACACCWNMRAGGTGTGA

TCACACCTYKNWGGTGTSA
SELEX
Jolma et al.(2013)
TBX21_6
0.756 0.751
TBX21
M05793_2.00
Homo sapiens
DAGGTGTKAN

NTMACACCTH
SELEX
Yin et al.(2017)
TBX21_eDBD_HT-SELEX
0.756 0.751
TBX21
M09425_2.00
Homo sapiens
NDSDRGSTGWBRN

NYVWCASCYHSHN
Misc
Kulakovskiy et al.(2013)
TBX21_HUMAN.H11MO.0.A
0.756 0.751
Tbx21
M09428_2.00
Mus musculus
DNDDSTGWSDND

HNHSWCASHHNH
Misc
Kulakovskiy et al.(2013)
TBX21_MOUSE.H11MO.0.A
0.756 0.751
Tbx21
M09648_2.00
Mus musculus
ADGTGWSAHN

NDTSWCACHT
Misc
Heinz et al.(2010)
CD8-Tbet_GSE33802
0.756 0.751
TBX21
M05794_2.00
Homo sapiens
DASGTGTKAW

WTMACACSTH
SELEX
Yin et al.(2017)
TBX21_eDBD_Methyl-HT-SELEX
0.756 0.751
SPU_025584
M00733_2.00
Strongylocentrotus purpuratus
RGGTGTGANN

NNTCACACCY
PBM
Cheatle-Jarvela et al.(2014)
SpTbr
0.756 0.569
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002940203 T-box 179 362

Links

Other T-box family TFs
Other Xenopus tropicalis TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Tbr1 Mus musculus ENSMUSG00000035033 D 0.843
ENSMPUG00000000551 Mustela putorius furo ENSMPUG00000000551 I 0.843
ENSNLEG00000002040 Nomascus leucogenys ENSNLEG00000002040 I 0.843
ENSOARG00000006620 Ovis aries ENSOARG00000006620 I 0.843
TBR1 Ochotona princeps ENSOPRG00000005150 I 0.843
TBR1 Otolemur garnettii ENSOGAG00000004936 I 0.843
TBR1 Monodelphis domestica ENSMODG00000005353 I 0.843
TBR1 Macaca mulatta ENSMMUG00000011911 I 0.843
TBR1 Gorilla gorilla ENSGGOG00000015752 I 0.843
TBR1 Homo sapiens ENSG00000136535 D 0.843
TBR1 Loxodonta africana ENSLAFG00000011541 I 0.843
ENSLOCG00000008583 Lepisosteus oculatus ENSLOCG00000008583 I 0.843
TBR1 Myotis lucifugus ENSMLUG00000006008 I 0.843
ENSPANG00000018688 Papio anubis ENSPANG00000018688 I 0.843
ENSPPYG00000012882 Pongo abelii ENSPPYG00000012882 I 0.843
ENSP00000374205 Macaca fascicularis ENSP00000374205 I 0.843
ENSP00000374205-D1 Bos grunniens ENSP00000374205-D1 I 0.843
Myotis_brandtii_SLC4A10_10035570 Myotis brandtii Myotis_brandtii_SLC4A10_10035570 I 0.843
Pvit_15940 Pogona vitticeps Pvit_15940 I 0.843
tbr1 Xenopus tropicalis XB-GENE-942241 I 0.843
Alligator_sinensis_CCG012002.1 Alligator sinensis Alligator_sinensis_CCG012002.1 I 0.843
ENSVPAG00000002720 Vicugna pacos ENSVPAG00000002720 I 0.843
TBR1 Pan troglodytes ENSPTRG00000012576 I 0.843
ENSPSIG00000004373 Pelodiscus sinensis ENSPSIG00000004373 I 0.843
ENSSHAG00000016616 Sarcophilus harrisii ENSSHAG00000016616 I 0.843
ENSSTOG00000023843 Ictidomys tridecemlineatus ENSSTOG00000023843 I 0.843
TBR1 Tupaia belangeri ENSTBEG00000014183 I 0.843
ENSFALG00000004466 Ficedula albicollis ENSFALG00000004466 I 0.843
TBR1 Oryctolagus cuniculus ENSOCUG00000005884 I 0.843
ENSCPOG00000005881 Cavia porcellus ENSCPOG00000005881 I 0.843
ENSCSAG00000015663 Chlorocebus sabaeus ENSCSAG00000015663 I 0.843
tbr1b Danio rerio ENSDARG00000004712 I 0.843
TBR1 Canis familiaris ENSCAFG00000009984 I 0.843
TBR1 Bos taurus ENSBTAG00000021692 I 0.843
ENSAMEG00000012360 Ailuropoda melanoleuca ENSAMEG00000012360 I 0.843
ENSAMXG00000009990 Astyanax mexicanus ENSAMXG00000009990 I 0.843
TBR1 Dasypus novemcinctus ENSDNOG00000009816 I 0.843
TBR1 Callithrix jacchus ENSCJAG00000005603 I 0.843
ENSLACG00000003893 Latimeria chalumnae ENSLACG00000003893 I 0.842
TBR1 Felis catus ENSFCAG00000025073 I 0.841
ENSGMOG00000014981 Gadus morhua ENSGMOG00000014981 I 0.837
tbr1b Oryzias latipes ENSORLG00000016828 I 0.835
ENSONIG00000008933 Oreochromis niloticus ENSONIG00000008933 I 0.835
ENSLOCG00000013335 Lepisosteus oculatus ENSLOCG00000013335 I 0.835
ENSPFOG00000017461 Poecilia formosa ENSPFOG00000017461 I 0.835
tbr1b Gasterosteus aculeatus ENSGACG00000005648 I 0.835
Alligator_sinensis_CCG014450.1 Alligator sinensis Alligator_sinensis_CCG014450.1 I 0.835
ENSXMAG00000011427 Xiphophorus maculatus ENSXMAG00000011427 I 0.835
ENSONIG00000018223 Oreochromis niloticus ENSONIG00000018223 I 0.828
tbx21 Tetraodon nigroviridis ENSTNIG00000010103 I 0.828
ENSXMAG00000013655 Xiphophorus maculatus ENSXMAG00000013655 I 0.828
ENSPFOG00000018019 Poecilia formosa ENSPFOG00000018019 I 0.828
ENSAMXG00000010492 Astyanax mexicanus ENSAMXG00000010492 I 0.825
tbx21 Takifugu rubripes ENSTRUG00000012995 I 0.825
tbx21 Danio rerio ENSDARG00000004473 I 0.825
ENSFALG00000009181 Ficedula albicollis ENSFALG00000009181 I 0.823
EOMES Anolis carolinensis ENSACAG00000014201 I 0.823
Ogr17175 Ophisaurus gracilis Ogr17175 I 0.823
eomes.S Xenopus laevis XB-GENE-6487182 I 0.823
ENSPSIG00000005360 Pelodiscus sinensis ENSPSIG00000005360 I 0.823
eomes Xenopus tropicalis XB-GENE-479769 I 0.823
EOMES Gallus gallus ENSGALG00000027247 I 0.823
ENSLOCG00000002398 Lepisosteus oculatus ENSLOCG00000002398 I 0.822
EOMES Callithrix jacchus ENSCJAG00000004263 I 0.819
eomesb Tetraodon nigroviridis ENSTNIG00000019116 I 0.818
ENSPFOG00000017938 Poecilia formosa ENSPFOG00000017938 I 0.818
eomesb Takifugu rubripes ENSTRUG00000008966 I 0.818
ENSONIG00000007180 Oreochromis niloticus ENSONIG00000007180 I 0.818
ENSPPYG00000014055 Pongo abelii ENSPPYG00000014055 I 0.815
ENSPANG00000011539 Papio anubis ENSPANG00000011539 I 0.815
EOMES Procavia capensis ENSPCAG00000013650 I 0.815
EOMES Gorilla gorilla ENSGGOG00000008358 I 0.815
EOMES Felis catus ENSFCAG00000003602 I 0.815
ENSSTOG00000020918 Ictidomys tridecemlineatus ENSSTOG00000020918 I 0.815
ENSSSCG00000011219 Sus scrofa ENSSSCG00000011219 I 0.815
ENSSHAG00000017378 Sarcophilus harrisii ENSSHAG00000017378 I 0.815
EOMES Otolemur garnettii ENSOGAG00000030966 I 0.815
EOMES Pan troglodytes ENSPTRG00000014705 I 0.815
EOMES Bos taurus ENSBTAG00000016920 I 0.815
EOMES Canis familiaris ENSCAFG00000005510 I 0.815
ENSSSCG00000022626 Sus scrofa ENSSSCG00000022626 I 0.815
EOMES Erinaceus europaeus ENSEEUG00000005958 I 0.815
ENSAMEG00000012731 Ailuropoda melanoleuca ENSAMEG00000012731 I 0.815
ENSNLEG00000004050 Nomascus leucogenys ENSNLEG00000004050 I 0.815
EOMES Loxodonta africana ENSLAFG00000004142 I 0.815
EOMES Equus caballus ENSECAG00000021052 I 0.815
ENSMPUG00000011981 Mustela putorius furo ENSMPUG00000011981 I 0.815
Eomes Dipodomys ordii ENSDORG00000016346 I 0.815
EOMES Homo sapiens ENSG00000163508 D 0.815
ENSMICG00000015729 Microcebus murinus ENSMICG00000015729 I 0.815
EOMES Myotis lucifugus ENSMLUG00000001462 I 0.815
ENSMMUG00000001904 Macaca mulatta ENSMMUG00000001904 I 0.815
ENSOARG00000014467 Ovis aries ENSOARG00000014467 I 0.815
Eomes Mus musculus ENSMUSG00000032446 D 0.815
ENSOCUG00000000451 Oryctolagus cuniculus ENSOCUG00000000451 I 0.815
EOMES Cavia porcellus ENSCPOG00000004381 I 0.815
tbr1b Takifugu rubripes ENSTRUG00000005183 I 0.813
eomesb Oryzias latipes ENSORLG00000005393 I 0.808
eomesa Takifugu rubripes ENSTRUG00000005361 I 0.802
eomesa Tetraodon nigroviridis ENSTNIG00000017582 I 0.802
ENSAMXG00000012247 Astyanax mexicanus ENSAMXG00000012247 I 0.802
eomes.L Xenopus laevis XB-GENE-865305 I 0.801
ENSXMAG00000014284 Xiphophorus maculatus ENSXMAG00000014284 I 0.800
ENSONIG00000019678 Oreochromis niloticus ENSONIG00000019678 I 0.799
ENSGMOG00000002634 Gadus morhua ENSGMOG00000002634 I 0.799
eomesa Gasterosteus aculeatus ENSGACG00000003160 I 0.799
ENSPFOG00000006471 Poecilia formosa ENSPFOG00000006471 I 0.796
Brh_R007719 Buceros rhinoceros Brh_R007719 I 0.796
eomesa Danio rerio ENSDARG00000006640 I 0.796
eomesa Oryzias latipes ENSORLG00000002320 I 0.796
ENSXMAG00000000528 Xiphophorus maculatus ENSXMAG00000000528 I 0.796
AAI66068 Xenopus tropicalis AAI66068 I 0.796
eomesb Danio rerio ENSDARG00000104243 I 0.796
eomesb Gasterosteus aculeatus ENSGACG00000006345 I 0.795
fgenesh2_pg.scaffold_55000054 Branchiostoma floridae fgenesh2_pg.scaffold_55000054 I 0.793
estExt_fgenesh2_kg.C_1840001 Branchiostoma floridae estExt_fgenesh2_kg.C_1840001 I 0.793
tbr1a Danio rerio ENSDARG00000076259 I 0.791
ENSP00000388620-D1 Bos grunniens ENSP00000388620-D1 I 0.788
ENSP00000388620 Macaca fascicularis ENSP00000388620 I 0.787
Sakowv30002752m.g Saccoglossus kowalevskii Sakowv30002752m.g I 0.787
tbr1b Tetraodon nigroviridis ENSTNIG00000016497 I 0.786
ENSLACG00000016985 Latimeria chalumnae ENSLACG00000016985 I 0.784
Tbr1 Rattus norvegicus ENSRNOG00000005049 I 0.780
ENSGMOG00000003675 Gadus morhua ENSGMOG00000003675 I 0.777
A0A075Q982_PATMI Patiria miniata A0A075Q982_PATMI D 0.770
LotgiG129911 Lottia gigantea LotgiG129911 I 0.768
TBX21 Callithrix jacchus ENSCJAG00000007796 I 0.764
ENSPMAG00000003985 Petromyzon marinus ENSPMAG00000003985 I 0.763
Myotis_brandtii_KPNB1_10030428 Myotis brandtii Myotis_brandtii_KPNB1_10030428 I 0.756
SPU_025584 Strongylocentrotus purpuratus SPU_025584 D 0.756
ENSP00000177694 Macaca fascicularis ENSP00000177694 I 0.756
ENSBTAP00000018875-D1 Bos grunniens ENSBTAP00000018875-D1 I 0.756
ENSAMEG00000004661 Ailuropoda melanoleuca ENSAMEG00000004661 I 0.756
TBX21 Pan troglodytes ENSPTRG00000009335 I 0.756
ENSCSAG00000002587 Chlorocebus sabaeus ENSCSAG00000002587 I 0.756
ENSOARG00000008340 Ovis aries ENSOARG00000008340 I 0.756
TBX21 Gorilla gorilla ENSGGOG00000002208 I 0.756
ENSNLEG00000001655 Nomascus leucogenys ENSNLEG00000001655 I 0.756
TBX21 Homo sapiens ENSG00000073861 D 0.756
TBX21 Macaca mulatta ENSMMUG00000007098 I 0.756
ENSMPUG00000015272 Mustela putorius furo ENSMPUG00000015272 I 0.756
Tbx21 Mus musculus ENSMUSG00000001444 D 0.756
Tbx21 Dipodomys ordii ENSDORG00000013302 I 0.756
TBX21 Otolemur garnettii ENSOGAG00000006160 I 0.756
ENSPPYG00000008879 Pongo abelii ENSPPYG00000008879 I 0.756
TBX21 Sus scrofa ENSSSCG00000017517 I 0.756
ENSSTOG00000001626 Ictidomys tridecemlineatus ENSSTOG00000001626 I 0.756
TBX21 Bos taurus ENSBTAG00000014199 I 0.756
TBX21 Pteropus vampyrus ENSPVAG00000004921 I 0.756
Tbx21 Rattus norvegicus ENSRNOG00000009427 I 0.756
TBX21 Canis familiaris ENSCAFG00000016705 I 0.756
TBX21 Felis catus ENSFCAG00000010607 I 0.756
TBX21 Myotis lucifugus ENSMLUG00000014542 I 0.753
TBX21 Oryctolagus cuniculus ENSOCUG00000012907 I 0.749
ENSMODG00000012526 Monodelphis domestica ENSMODG00000012526 I 0.743
ENSSHAG00000018315 Sarcophilus harrisii ENSSHAG00000018315 I 0.743
EOMES Ornithorhynchus anatinus ENSOANG00000012619 I 0.736