CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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LLOJ005386
(
Lutzomyia longipalpis
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00907 (T-box)
IPR001699
LLOJ005386
T341540_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
org-1
M03988_2.00
Drosophila melanogaster
DRGTGTBAD
HTVACACYH
SELEX
Nitta et al.(2015)
org-1_1
0.816
0.807
org-1
M03989_2.00
Drosophila melanogaster
TRACACYTARGTGTGA
TCACACYTARGTGTYA
SELEX
Nitta et al.(2015)
org-1_2
0.816
0.807
Tbx1
M00832_2.00
Mus musculus
NRGTGTGAANN
NNTTCACACYN
PBM
Weirauch et al.(2013)
pTH3822
0.759
0.680
TBX1
M03570_2.00
Homo sapiens
ARGTGTKAAAWHARGTGTGA
TCACACYTDWTTTMACACYT
SELEX
Jolma et al.(2013)
TBX1_1
0.759
0.680
TBX1
M03571_2.00
Homo sapiens
AGGTGTGAWWTTCACACCT
AGGTGTGAAWWTCACACCT
SELEX
Jolma et al.(2013)
TBX1_2
0.759
0.680
TBX1
M03572_2.00
Homo sapiens
AGGTGTGA
TCACACCT
SELEX
Jolma et al.(2013)
TBX1_3
0.759
0.680
TBX1
M03573_2.00
Homo sapiens
YYTCACACMTYWRAGGTGTGAAA
TTTCACACCTYWRAKGTGTGARR
SELEX
Jolma et al.(2013)
TBX1_4
0.759
0.680
TBX1
M03574_2.00
Homo sapiens
YTCACACCTDKAGGTGTGAA
TTCACACCTMHAGGTGTGAR
SELEX
Jolma et al.(2013)
TBX1_5
0.759
0.680
TBX1
M05821_2.00
Homo sapiens
BDRGGTGTGARV
BYTCACACCYHV
SELEX
Yin et al.(2017)
TBX1_eDBD_HT-SELEX
0.759
0.680
Tbx1
M11386_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX1_07
0.759
0.680
TBX1
M05822_2.00
Homo sapiens
DNWGGTGTGARN
NYTCACACCWNH
SELEX
Yin et al.(2017)
TBX1_eDBD_Methyl-HT-SELEX
0.759
0.680
TBX20
M03565_2.00
Homo sapiens
AGGTGTKARVGYGTGA
TCACRCBYTMACACCT
SELEX
Jolma et al.(2013)
TBX20_1
0.738
0.641
TBX20
M03566_2.00
Homo sapiens
AGGTGTGAAWDTSACACBT
AVGTGTSAHWTTCACACCT
SELEX
Jolma et al.(2013)
TBX20_2
0.738
0.641
TBX20
M03567_2.00
Homo sapiens
NNNDAGGTGTGAAND
HNTTCACACCTHNNN
SELEX
Jolma et al.(2013)
TBX20_3
0.738
0.641
TBX20
M03568_2.00
Homo sapiens
DAGGTGTGAWR
YWTCACACCTH
SELEX
Jolma et al.(2013)
TBX20_4
0.738
0.641
TBX20
M03569_2.00
Homo sapiens
AGGTGTKANGKTGTSA
TSACAMCNTMACACCT
SELEX
Jolma et al.(2013)
TBX20_5
0.738
0.641
TBX20
M05813_2.00
Homo sapiens
DAGGTGTKARSGTGTGAA
TTCACACSYTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1
0.738
0.641
TBX20
M05814_2.00
Homo sapiens
NAGGTGTGAAWTTCACACCTN
NAGGTGTGAAWTTCACACCTN
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2
0.738
0.641
TBX20
M05817_2.00
Homo sapiens
DRRGTGTBADVGYGTBAN
NTVACRCBHTVACACYYH
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1
0.738
0.641
TBX20
M05818_2.00
Homo sapiens
WTCACACYTAGGTGTKAM
KTMACACCTARGTGTGAW
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2
0.738
0.641
TBX20
M11385_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX20_05
0.738
0.641
TBX20
M05815_2.00
Homo sapiens
DAGGTGTKAASGYGTKAA
TTMACRCSTTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1
0.738
0.641
TBX20
M05816_2.00
Homo sapiens
DASGTGTGAWWWTCACACCTH
DAGGTGTGAWWWTCACACSTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2
0.738
0.641
TBX20
M05819_2.00
Homo sapiens
DRGGYGTBARVGYGTKAN
NTMACRCBYTVACRCCYH
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1
0.738
0.641
TBX20
M05820_2.00
Homo sapiens
TTMACRCCTAVGTGTGAA
TTCACACBTAGGYGTKAA
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2
0.738
0.641
Tbx20
M00835_2.00
Mus musculus
NRRGTGTBAN
NTVACACYYN
PBM
Weirauch et al.(2013)
pTH3777
0.738
0.635
Tbx20
M09430_2.00
Mus musculus
NDSTGNTGACAGSN
NSCTGTCANCASHN
Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C
0.738
0.635
Tbx20
M09650_2.00
Mus musculus
SCTGTCADCASN
NSTGHTGACAGS
Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636
0.738
0.635
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LLOJ005386-PA
T-box
165
355
VMLETKQLWDKFHEQGTEMIVTKTGRRMFPTFQVRIFGLDPQATYIMLMDFVPCDDKRYRYAFHSWVIAGKADPISPPRIHVHPDSPALGSMDEANVSFDKLKLTNNQLDENGHIILNSMHRYQPRFHIVYLPPKVTASRVGVSGTTTEEQSHYRTFTFPETAFTAVTAYQNQRVTQLKIVSNPFAKGFRE
Links
Other
T-box
family TFs
Other
Lutzomyia longipalpis
TFs
163 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy