ACOC_0000095801 (Angiostrongylus costaricensis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 ACOC_0000095801 T341573_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN

NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.808 0.801
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB

VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.808 0.801
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN

NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.808 0.801
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN

NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.808 0.801
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH

DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.808 0.801
TBX2
M11381_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.808 0.801
TBX2
M11382_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.808 0.801
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN

NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.808 0.801
Tbx3
M00834_2.00
Mus musculus
NHNDCACNHN

NDNGTGHNDN
PBM
Weirauch et al.(2013)
pTH3998
0.808 0.790
TBX3
M05801_2.00
Homo sapiens
NDSGTGTBRN

NYVACACSHN
SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX
0.808 0.790
TBX3
M09426_2.00
Homo sapiens
DVDGGTGBNAR

YTNVCACCHBH
Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C
0.808 0.790
Tbx3
M09429_2.00
Mus musculus
RRGGTGBBR

YVVCACCYY
Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B
0.808 0.790
TBX3
M05802_2.00
Homo sapiens
DAGGTGTKAN

NTMACACCTH
SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX
0.808 0.790
XP_008203914.1
M01029_2.00
Nasonia vitripennis
AGGTGTBA

TVACACCT
PBM
SebePedros et al.(2013)
pTH9336
0.790 0.751
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.784 0.652
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN

NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.780 0.796
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN

NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.780 0.790
estExt_fgenesh2_pg.C_1570024
M01030_2.00
Branchiostoma floridae
NHNDCACNHN

NDNGTGHNDN
PBM
SebePedros et al.(2013)
pTH9244
0.773 0.663
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACOC_0000095801-mRNA-1 T-box 56 236

Links

Other T-box family TFs
Other Angiostrongylus costaricensis TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30147.m014309 Ricinus communis 30147.m014309 N 0.000
ARR13 Arabidopsis thaliana AT2G27070 N 0.000
ARR21 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000557 N 0.000
ARR21 Arabidopsis thaliana AT5G07210 N 0.000
Bo2g007540 Brassica oleracea Bo2g007540 N 0.000
Bo3g004250 Brassica oleracea Bo3g004250 N 0.000
Bo9g175250 Brassica oleracea Bo9g175250 N 0.000
Bostr.13129s0247 Boechera stricta Bostr.13129s0247 N 0.000
Bra005928 Brassica rapa Bra005928 N 0.000
Bra009284 Brassica rapa Bra009284 N 0.000
Cagra.6496s0001 Capsella grandiflora Cagra.6496s0001 N 0.000
Carubv10003421m.g Capsella rubella Carubv10003421m.g N 0.000
Carubv10006317m.g Capsella rubella Carubv10006317m.g N 0.000
Carubv10007858m.g Capsella rubella Carubv10007858m.g N 0.000
cassava21270.m1 Manihot esculenta cassava21270.m1 N 0.000
cassava35050.m1 Manihot esculenta cassava35050.m1 N 0.000
Ca_20899 Cicer arietinum Ca_20899 I 0.000
Ciclev10006586m.g Citrus clementina Ciclev10006586m.g N 0.000
Ciclev10006834m.g Citrus clementina Ciclev10006834m.g N 0.000
gene13325-v1.0-hybrid Fragaria vesca gene13325-v1.0-hybrid N 0.000
GSMUA_Achr10G23650_001 Musa acuminata GSMUA_Achr10G23650_001 N 0.000
MDP0000228719 Malus domestica MDP0000228719 N 0.000
mgf019327m Mimulus guttatus mgf019327m N 0.000
orange1.1g040406m.g Citrus sinensis orange1.1g040406m.g N 0.000
orange1.1g043479m.g Citrus sinensis orange1.1g043479m.g N 0.000
POPTR_0012s13900 Populus trichocarpa POPTR_0012s13900 N 0.000
POPTR_0015s13860 Populus trichocarpa POPTR_0015s13860 I 0.000
PRUPE_ppa023185mg Prunus persica PRUPE_ppa023185mg N 0.000
Thhalv10016040m.g Eutrema salsugineum Thhalv10016040m.g N 0.000