ACOC_0000095801 (Angiostrongylus costaricensis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 ACOC_0000095801 T341573_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN

NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.808 0.801
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB

VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.808 0.801
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN

NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.808 0.801
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN

NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.808 0.801
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH

DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.808 0.801
TBX2
M11381_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.808 0.801
TBX2
M11382_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.808 0.801
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN

NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.808 0.801
Tbx3
M00834_2.00
Mus musculus
NHNDCACNHN

NDNGTGHNDN
PBM
Weirauch et al.(2013)
pTH3998
0.808 0.790
TBX3
M05801_2.00
Homo sapiens
NDSGTGTBRN

NYVACACSHN
SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX
0.808 0.790
TBX3
M09426_2.00
Homo sapiens
DVDGGTGBNAR

YTNVCACCHBH
Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C
0.808 0.790
Tbx3
M09429_2.00
Mus musculus
RRGGTGBBR

YVVCACCYY
Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B
0.808 0.790
TBX3
M05802_2.00
Homo sapiens
DAGGTGTKAN

NTMACACCTH
SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX
0.808 0.790
XP_008203914.1
M01029_2.00
Nasonia vitripennis
AGGTGTBA

TVACACCT
PBM
SebePedros et al.(2013)
pTH9336
0.790 0.751
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.784 0.652
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN

NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.780 0.796
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN

NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.780 0.790
estExt_fgenesh2_pg.C_1570024
M01030_2.00
Branchiostoma floridae
NHNDCACNHN

NDNGTGHNDN
PBM
SebePedros et al.(2013)
pTH9244
0.773 0.663
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACOC_0000095801-mRNA-1 T-box 56 236

Links

Other T-box family TFs
Other Angiostrongylus costaricensis TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g10386 Acanthocheilonema viteae nAv.1.0.1.g10386 N 0.000
ENSAPLG00000011496 Anas platyrhynchos ENSAPLG00000011496 I 0.000
ASIM_0001656501 Anisakis simplex ASIM_0001656501 N 0.000
ALUE_0000768501 Ascaris lumbricoides ALUE_0000768501 N 0.000
ASU_10357 Ascaris suum ASU_10357 N 0.000
ACEP23524 Atta cephalotes ACEP23524 I 0.000
Bm3140 Brugia malayi Bm3140 N 0.000
BTMF_0000153801 Brugia timori BTMF_0000153801 N 0.000
EEL_0000740001 Elaeophora elaphi EEL_0000740001 N 0.000
EVEC_0000974101 Enterobius vermicularis EVEC_0000974101 N 0.000
nLs.2.1.2.g07765 Litomosoides sigmodontis nLs.2.1.2.g07765 N 0.000
LOAG_07479 Loa loa LOAG_07479 N 0.000
OFLC_0000751101 Onchocerca flexuosa OFLC_0000751101 N 0.000
nOo.2.0.1.g09375 Onchocerca ochengi nOo.2.0.1.g09375 N 0.000
WBGene00238556 Onchocerca volvulus WBGene00238556 N 0.000
TCLT_0000843701 Thelazia callipaeda TCLT_0000843701 N 0.000
TCNE_0001618601 Toxocara canis TCNE_0001618601 N 0.000
D917_04509 Trichinella nativa D917_04509 I 0.000
EFV60166 Trichinella spiralis EFV60166 I 0.000
TMUE_s0005013500 Trichuris muris TMUE_s0005013500 I 0.000
D918_09504 Trichuris suis D918_09504 I 0.000
TTRE_0000192701 Trichuris trichiura TTRE_0000192701 I 0.000
Tal_R011237 Tyto alba Tal_R011237 I 0.000
WUBG_15118 Wuchereria bancrofti WUBG_15118 N 0.000