CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L898_g10464
(
Steinernema monticolum
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00907 (T-box)
IPR001699
L898_g10464
T341791_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN
NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.736
0.718
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB
VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.736
0.718
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN
NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.736
0.718
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN
NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.736
0.718
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH
DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.736
0.718
TBX2
M11381_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.736
0.718
TBX2
M11382_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.736
0.718
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN
NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.736
0.718
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L898_g10464.t1
T-box
76
256
VELDDKDLWDSFSNVGTEMVITKSGRRIFPAFKVKVSGLDRKAKYFFIMDIIPADDQRYKFHNSRWITAGKADPEMPKKIYFHPESPATGEHWMQKGANFQKMKLTNNMSDKHGFTILNSMHKYQPRVHVVRADHPAQLLVATFHTFVFHETEFIAVTAYQNENVTQLKINHNPFAKGFRD
L898_g10464.t2
T-box
76
259
VELDDKDLWDSFSNVGTEMVITKSGRRIFPAFKVKVSGLDRKAKYFFIMDIIPADDQRYKFHNSRWITAGKADPEMPKKIYFHPESPATGEHWMQKGANFQKMKLTNNMSDKHGFPFQTILNSMHKYQPRVHVVRADHPAQLLVATFHTFVFHETEFIAVTAYQNENVTQLKINHNPFAKGFRD
L898_g10464.t3
T-box
163
343
VELDDKDLWDSFSNVGTEMVITKSGRRIFPAFKVKVSGLDRKAKYFFIMDIIPADDQRYKFHNSRWITAGKADPEMPKKIYFHPESPATGEHWMQKGANFQKMKLTNNMSDKHGFTILNSMHKYQPRVHVVRADHPAQLLVATFHTFVFHETEFIAVTAYQNENVTQLKINHNPFAKGFRD
Links
Other
T-box
family TFs
Other
Steinernema monticolum
TFs
101 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy