M408DRAFT_329006 (Serendipita vermifera)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 M408DRAFT_329006 T342675_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW

WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.882 0.882
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB

VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.882 0.882
SPT15
M11393_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.882 0.882
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.787 0.787
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.787 0.787
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.787 0.787
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.787 0.787
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.787 0.787
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.787 0.787
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.787 0.787
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.787 0.787
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.787 0.787
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.787 0.787
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KIM28955 TBP 1 43
KIM28955 TBP 51 134

Links

Other TBP family TFs
Other Serendipita vermifera TFs

315 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA036374 Oryza indica BGIOSGA036374 N 0.000
BRADI4G39130 Brachypodium distachyon BRADI4G39130 N 0.000
F775_01850 Aegilops tauschii F775_01850 N 0.000
LPERR12G07400 Leersia perrieri LPERR12G07400 N 0.000
MLOC_55909 Hordeum vulgare MLOC_55909 N 0.000
OB12G17360 Oryza brachyantha OB12G17360 N 0.000
OGLUM12G09840 Oryza glumaepatula OGLUM12G09840 N 0.000
OLONG_018459 Oryza longistaminata OLONG_018459 N 0.000
OMERI12G06120 Oryza meridionalis OMERI12G06120 N 0.000
ONIVA12G08260 Oryza nivara ONIVA12G08260 N 0.000
OPUNC12G07790 Oryza punctata OPUNC12G07790 N 0.000
ORGLA12G0080500 Oryza glaberrima ORGLA12G0080500 N 0.000
ORUFI12G09490 Oryza rufipogon ORUFI12G09490 N 0.000
OS12G0279100 Oryza sativa OS12G0279100 N 0.000
Pavir.Cb01041 Panicum virgatum Pavir.Cb01041 N 0.000
Pavir.J05247 Panicum virgatum Pavir.J05247 N 0.000
Traes_5AS_7E3208FD4 Triticum aestivum Traes_5AS_7E3208FD4 N 0.000
Traes_5BS_23717182B Triticum aestivum Traes_5BS_23717182B N 0.000
Traes_5DS_976CBF9EB Triticum aestivum Traes_5DS_976CBF9EB N 0.000
TRIUR3_21570 Triticum urartu TRIUR3_21570 N 0.000