NEMVEDRAFT_v1g203375 (Nematostella vectensis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 NEMVEDRAFT_v1g203375 T342743_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.940 0.940
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.940 0.940
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.940 0.940
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.940 0.940
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.940 0.940
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.940 0.940
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.940 0.940
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.940 0.940
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.940 0.940
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.940 0.940
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW

WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.807 0.807
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB

VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.807 0.807
SPT15
M11393_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.807 0.807
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO44103 TBP 19 100
EDO44103 TBP 108 191

Links

Other TBP family TFs
Other Nematostella vectensis TFs

756 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ATNFXL1 Arabidopsis lyrata fgenesh2_kg.1__1086__AT1G10170.1 N 0.000
ATNFXL1 Arabidopsis thaliana AT1G10170 N 0.000
Bo5g010600 Brassica oleracea Bo5g010600 N 0.000
Bo8g059130 Brassica oleracea Bo8g059130 N 0.000
Bra018458 Brassica rapa Bra018458 N 0.000
Bra019958 Brassica rapa Bra019958 N 0.000
PK00983.1 Cannabis sativa PK00983.1 N 0.000
Eucgr.K02284 Eucalyptus grandis Eucgr.K02284 N 0.000
Eucgr.H00552 Eucalyptus grandis Eucgr.H00552 N 0.000
Thhalv10006708m.g Eutrema salsugineum Thhalv10006708m.g N 0.000
GLYMA08G06040 Glycine max GLYMA08G06040 N 0.000
GLYMA07G11834 Glycine max GLYMA07G11834 N 0.000
GLYMA09G30343 Glycine max GLYMA09G30343 N 0.000
Gorai.006G058600 Gossypium raimondii Gorai.006G058600 N 0.000
Lus10034470.g Linum usitatissimum Lus10034470.g N 0.000
Lus10025071.g Linum usitatissimum Lus10025071.g N 0.000
chr2.LjT01H08.70.nc Lotus japonicus chr2.LjT01H08.70.nc N 0.000
MDP0000603846 Malus domestica MDP0000603846 N 0.000
MDP0000280911 Malus domestica MDP0000280911 N 0.000
cassava4965.m1 Manihot esculenta cassava4965.m1 N 0.000
MTR_6g071140 Medicago truncatula MTR_6g071140 N 0.000
mgf004430m Mimulus guttatus mgf004430m N 0.000
POPTR_0015s05030 Populus trichocarpa POPTR_0015s05030 N 0.000
POPTR_0012s04070 Populus trichocarpa POPTR_0012s04070 N 0.000
Pm025049 Prunus mume Pm025049 N 0.000
PRUPE_ppa000543mg Prunus persica PRUPE_ppa000543mg N 0.000
27791.m000083 Ricinus communis 27791.m000083 N 0.000
SapurV1A.0082s0290 Salix purpurea SapurV1A.0082s0290 N 0.000
TCM_012484 Theobroma cacao TCM_012484 N 0.000
TCM_017029 Theobroma cacao TCM_017029 N 0.000