Aquca_008_00219 (Aquilegia coerulea)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Aquca_008_00219 T343143_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW

WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.772 0.772
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB

VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.772 0.772
SPT15
M11393_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.772 0.772
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.743 0.743
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.743 0.743
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.743 0.743
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.743 0.743
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.743 0.743
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.743 0.743
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.743 0.743
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.743 0.743
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.743 0.743
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.743 0.743
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aquca_008_00219.1 TBP 12 94
Aquca_008_00219.1 TBP 102 185

Links

Other TBP family TFs
Other Aquilegia coerulea TFs

682 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ALNC14_027820 Albugo laibachii ALNC14_027820 N 0.000
HpaG806957 Hyaloperonospora arabidopsidis HpaG806957 N 0.000
estExt_fgenesh1_kg.C_2620004 Phytophthora capsici estExt_fgenesh1_kg.C_2620004 N 0.000
PITG_19177 Phytophthora infestans PITG_19177 N 0.000
fgenesh_scip_prom.46568.5520 Phytophthora kernoviae fgenesh_scip_prom.46568.5520 N 0.000
fgenesh_scip_prom.28083.3966 Phytophthora lateralis fgenesh_scip_prom.28083.3966 N 0.000
F443_04902 Phytophthora parasitica F443_04902 N 0.000
Phyra78502 Phytophthora ramorum Phyra78502 N 0.000
Physo127993 Phytophthora sojae Physo127993 N 0.000
maker-pag1_scaffold_198-snap-gene-0.19 Pythium aphanidermatum maker-pag1_scaffold_198-snap-gene-0.19 N 0.000
maker-par_contig_1574-fgenesh-gene-0.1 Pythium arrhenomanes maker-par_contig_1574-fgenesh-gene-0.1 N 0.000
maker-piw_contig_312-fgenesh-gene-0.2 Pythium iwayamai maker-piw_contig_312-fgenesh-gene-0.2 N 0.000
PYU1_G011596 Pythium ultimum PYU1_G011596 N 0.000
maker-pve_contig_65-fgenesh-gene-0.18 Pythium vexans maker-pve_contig_65-fgenesh-gene-0.18 N 0.000
SPRG_08759 Saprolegnia parasitica SPRG_08759 N 0.000