Bostr.3640s0136 (Boechera stricta)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Bostr.3640s0136 T343149_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW

WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.844 0.844
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB

VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.844 0.844
SPT15
M11393_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.844 0.844
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.826 0.826
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.826 0.826
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.826 0.826
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.826 0.826
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.826 0.826
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.826 0.826
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.826 0.826
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.826 0.826
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.826 0.826
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.826 0.826
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.3640s0136.1.p TBP 22 104
Bostr.3640s0136.1.p TBP 112 195

Links

Other TBP family TFs
Other Boechera stricta TFs

787 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL000181 Aedes aegypti AAEL000181 N 0.000
AALB009551 Anopheles albimanus AALB009551 N 0.000
AARA006496 Anopheles arabiensis AARA006496 N 0.000
AATE004647 Anopheles atroparvus AATE004647 N 0.000
ACEP25803 Atta cephalotes ACEP25803 N 0.000
ACHR006211 Anopheles christyi ACHR006211 N 0.000
ACOM033657 Anopheles coluzzii ACOM033657 N 0.000
ACUA025632 Anopheles culicifacies ACUA025632 N 0.000
ACYPI001480 Acyrthosiphon pisum ACYPI001480 N 0.000
ADAC005840 Anopheles darlingi ADAC005840 N 0.000
ADIR010123 Anopheles dirus ADIR010123 N 0.000
AEPI009418 Anopheles epiroticus AEPI009418 N 0.000
AEPI010254 Anopheles epiroticus AEPI010254 N 0.000
AFAF001135 Anopheles farauti AFAF001135 N 0.000
AFUN001272 Anopheles funestus AFUN001272 N 0.000
AFUN005717 Anopheles funestus AFUN005717 N 0.000
AGAP001099 Anopheles gambiae AGAP001099 N 0.000
ALUE_0000699101 Ascaris lumbricoides ALUE_0000699101 N 0.000
AMAM014030 Anopheles maculatus AMAM014030 N 0.000
AMAM022417 Anopheles maculatus AMAM022417 N 0.000
AMEC012325 Anopheles melas AMEC012325 N 0.000
AMEM003228 Anopheles merus AMEM003228 N 0.000
AMIN002364 Anopheles minimus AMIN002364 N 0.000
AMIN005634 Anopheles minimus AMIN005634 N 0.000
AQUA001810 Anopheles quadriannulatus AQUA001810 N 0.000
ASIS018375 Anopheles sinensis ASIS018375 N 0.000
ASTEI10740 Anopheles stephensi ASTEI10740 N 0.000
ASU_00726 Ascaris suum ASU_00726 N 0.000
BGIBMGA010711 Bombyx mori BGIBMGA010711 N 0.000
CBN07735 Caenorhabditis brenneri CBN07735 N 0.000
CBN31697 Caenorhabditis brenneri CBN31697 N 0.000
Cflo_01038--XP_625055.2_APIME Camponotus floridanus Cflo_01038--XP_625055.2_APIME N 0.000
CPIJ003178 Culex quinquefasciatus CPIJ003178 N 0.000
CPIJ007271 Culex quinquefasciatus CPIJ007271 N 0.000
CpipJ_CPIJ003178 Culex pipiens CpipJ_CPIJ003178 N 0.000
CpipJ_CPIJ007271 Culex pipiens CpipJ_CPIJ007271 N 0.000
CRE14258 Caenorhabditis remanei CRE14258 N 0.000
D918_03887 Trichuris suis D918_03887 N 0.000
DAPPUDRAFT_304382 Daphnia pulex DAPPUDRAFT_304382 N 0.000
EFV52201 Trichinella spiralis EFV52201 N 0.000
ENSGMOG00000013406 Gadus morhua ENSGMOG00000013406 N 0.000
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N 0.000
ENSTGUG00000014902 Taeniopygia guttata ENSTGUG00000014902 N 0.000
GA10956 Drosophila pseudoobscura FBgn0071012 N 0.000
GB42921 Apis mellifera GB42921 N 0.000
GE10775 Drosophila yakuba FBgn0228617 N 0.000
GF23180 Drosophila ananassae FBgn0100174 N 0.000
GG12321 Drosophila erecta FBgn0104611 N 0.000
GH18462 Drosophila grimshawi FBgn0125929 N 0.000
GI24041 Drosophila mojavensis FBgn0146764 N 0.000
GJ23670 Drosophila virilis FBgn0210767 N 0.000
GK13168 Drosophila willistoni FBgn0215177 N 0.000
GL13862 Drosophila persimilis FBgn0151467 N 0.000
GM22062 Drosophila sechellia FBgn0176933 N 0.000
HMEL006186 Heliconius melpomene HMEL006186 N 0.000
Hsal_02676--XP_625055.2_APIME Harpegnathos saltator Hsal_02676--XP_625055.2_APIME N 0.000
Hsal_06265--XP_624018.2_APIME Harpegnathos saltator Hsal_06265--XP_624018.2_APIME N 0.000
ISCW005293 Ixodes scapularis ISCW005293 N 0.000
KGM_06850 Danaus plexippus KGM_06850 N 0.000
L798_00437 Zootermopsis nevadensis L798_00437 N 0.000
L798_12146 Zootermopsis nevadensis L798_12146 N 0.000
L889_g13125 Steinernema feltiae L889_g13125 N 0.000
LCUP007789 Lucilia cuprina LCUP007789 N 0.000
LDEC007066 Leptinotarsa decemlineata LDEC007066 N 0.000
LLOJ004028 Lutzomyia longipalpis LLOJ004028 N 0.000
LotgiG176647 Lottia gigantea LotgiG176647 N 0.000
MDOA008474 Musca domestica MDOA008474 N 0.000
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N 0.000
Minc06622 Meloidogyne incognita Minc06622 N 0.000
NEMVEDRAFT_v1g240009 Nematostella vectensis NEMVEDRAFT_v1g240009 N 0.000
pbrm-1 Caenorhabditis elegans WBGene00007042 N 0.000
PHUM244090 Pediculus humanus PHUM244090 N 0.000
polybromo Drosophila melanogaster FBgn0039227 N 0.000
PPAI002532 Phlebotomus papatasi PPAI002532 N 0.000
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N 0.000
RPRC014309 Rhodnius prolixus RPRC014309 N 0.000
RSKR_0000620800 Rhabditophanes kr3021 RSKR_0000620800 N 0.000
SINV16486 Solenopsis invicta SINV16486 N 0.000
SMAR009325 Strigamia maritima SMAR009325 N 0.000
SMAR009610 Strigamia maritima SMAR009610 N 0.000
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N 0.000
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N 0.000
SSTP_0001127200 Strongyloides stercoralis SSTP_0001127200 N 0.000
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N 0.000
TC000618 Tribolium castaneum TC000618 N 0.000
TCNE_0000652201 Toxocara canis TCNE_0000652201 N 0.000
tox2 Takifugu rubripes ENSTRUG00000013848 N 0.000
TOX2 Sorex araneus ENSSARG00000001080 N 0.000
YQE_05481 Dendroctonus ponderosae YQE_05481 N 0.000