Lus10031531.g (Linum usitatissimum)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Lus10031531.g T343175_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW

WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.766 0.766
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB

VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.766 0.766
SPT15
M11393_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.766 0.766
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.737 0.737
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.737 0.737
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.737 0.737
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.737 0.737
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.737 0.737
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.737 0.737
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.737 0.737
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.737 0.737
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.737 0.737
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10031531 TBP 17 99
Lus10031531 TBP 107 190

Links

Other TBP family TFs
Other Linum usitatissimum TFs

699 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA004778 Oryza indica BGIOSGA004778 N 0.000
ORUFI01G40180 Oryza rufipogon ORUFI01G40180 N 0.000
OS01G0842200 Oryza sativa OS01G0842200 N 0.000
Sb03g039510 Sorghum bicolor Sb03g039510 N 0.000
Si000234m.g Setaria italica Si000234m.g N 0.000
Traes_3AL_60B6CD0A5 Triticum aestivum Traes_3AL_60B6CD0A5 N 0.000
Traes_3B_A25F058E5 Triticum aestivum Traes_3B_A25F058E5 N 0.000
TRAES3BF090100150CFD_g Triticum aestivum TRAES3BF090100150CFD_g N 0.000
TRAES3BF108400020CFD_g Triticum aestivum TRAES3BF108400020CFD_g N 0.000
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N 0.000
TRIUR3_23165 Triticum urartu TRIUR3_23165 N 0.000
ORGLA01G0306900 Oryza glaberrima ORGLA01G0306900 N 0.000
OPUNC01G35740 Oryza punctata OPUNC01G35740 N 0.000
ONIVA10G04710 Oryza nivara ONIVA10G04710 N 0.000
BRADI2G54670 Brachypodium distachyon BRADI2G54670 N 0.000
F775_11164 Aegilops tauschii F775_11164 N 0.000
GRMZM2G157679 Zea mays GRMZM2G157679 N 0.000
LPERR01G31690 Leersia perrieri LPERR01G31690 N 0.000
MLOC_69561 Hordeum vulgare MLOC_69561 N 0.000
OB01G45620 Oryza brachyantha OB01G45620 N 0.000
OBART01G36810 Oryza barthii OBART01G36810 N 0.000
OGLUM01G40820 Oryza glumaepatula OGLUM01G40820 N 0.000
OLONG_023424 Oryza longistaminata OLONG_023424 N 0.000
OMERI01G33930 Oryza meridionalis OMERI01G33930 N 0.000
Pavir.Eb03680 Panicum virgatum Pavir.Eb03680 N 0.000