tbp (Xenopus tropicalis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 XB-GENE-488470 T343258_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
1.000 1.000
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
1.000 1.000
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
1.000 1.000
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
1.000 1.000
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
1.000 1.000
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
1.000 1.000
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
1.000 1.000
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
1.000 1.000
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
1.000 1.000
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
1.000 1.000
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW

WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.808 0.808
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB

VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.808 0.808
SPT15
M11393_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.808 0.808
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI60510 TBP 120 202
AAI60510 TBP 210 293
AAI71174 TBP 120 202
AAI71174 TBP 210 293
AAI71176 TBP 120 202
AAI71176 TBP 210 293
CAJ83650 TBP 120 202
CAJ83650 TBP 210 293

Links

Other TBP family TFs
Other Xenopus tropicalis TFs

774 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_07803 Aegilops tauschii F775_07803 I 0.000
F775_32205 Aegilops tauschii F775_32205 I 0.000
AMTR_s00048p00108400 Amborella trichopoda AMTR_s00048p00108400 I 0.000
AMTR_s00059p00094730 Amborella trichopoda AMTR_s00059p00094730 I 0.000
Aquca_013_00209 Aquilegia coerulea Aquca_013_00209 I 0.000
Aquca_002_01218 Aquilegia coerulea Aquca_002_01218 I 0.000
GBF1 Arabidopsis lyrata scaffold_700433.1 I 0.000
bZIP68 Arabidopsis lyrata fgenesh2_kg.1__3350__AT1G32150.1 I 0.000
BZIP16 Arabidopsis thaliana AT2G35530 D 0.000
GBF1 Arabidopsis thaliana AT4G36730 D 0.000
BZIP68 Arabidopsis thaliana AT1G32150 D 0.000
Bostr.23794s0549 Boechera stricta Bostr.23794s0549 I 0.000
Bostr.7867s1529 Boechera stricta Bostr.7867s1529 I 0.000
Bostr.3359s0141 Boechera stricta Bostr.3359s0141 I 0.000
BRADI4G39630 Brachypodium distachyon BRADI4G39630 I 0.000
BRADI3G02730 Brachypodium distachyon BRADI3G02730 I 0.000
Bo1g005460 Brassica oleracea Bo1g005460 I 0.000
Bo4g038560 Brassica oleracea Bo4g038560 I 0.000
Bo4g183320 Brassica oleracea Bo4g183320 I 0.000
Bra005335 Brassica rapa Bra005335 I 0.000
Bra010572 Brassica rapa Bra010572 I 0.000
Bra011701 Brassica rapa Bra011701 I 0.000
PK23964.1 Cannabis sativa PK23964.1 D 0.000
Cagra.0993s0063 Capsella grandiflora Cagra.0993s0063 I 0.000
Cagra.3359s0011 Capsella grandiflora Cagra.3359s0011 I 0.000
Cagra.5996s0003 Capsella grandiflora Cagra.5996s0003 I 0.000
Carubv10005287m.g Capsella rubella Carubv10005287m.g I 0.000
evm.TU.supercontig_158.7 Carica papaya evm.TU.supercontig_158.7 I 0.000
evm.TU.supercontig_2741.1 Carica papaya evm.TU.supercontig_2741.1 I 0.000
fgeneshCV_pg.C_scaffold_12000127 Chlorella vulgaris fgeneshCV_pg.C_scaffold_12000127 I 0.000
Ca_11455 Cicer arietinum Ca_11455 I 0.000
Ca_15839 Cicer arietinum Ca_15839 I 0.000
Ca_01293 Cicer arietinum Ca_01293 I 0.000
Cla014415 Citrullus lanatus Cla014415 I 0.000
Cla016502 Citrullus lanatus Cla016502 I 0.000
Cla008988 Citrullus lanatus Cla008988 I 0.000
Ciclev10001333m.g Citrus clementina Ciclev10001333m.g I 0.000
Ciclev10025963m.g Citrus clementina Ciclev10025963m.g I 0.000
orange1.1g018605m.g Citrus sinensis orange1.1g018605m.g I 0.000
orange1.1g036551m.g Citrus sinensis orange1.1g036551m.g I 0.000
Genemark1.5055_g Coccomyxa subellipsoidea C169 Genemark1.5055_g I 0.000
Cucsa.322110 Cucumis sativus Cucsa.322110 I 0.000
Cucsa.104970 Cucumis sativus Cucsa.104970 I 0.000
Cucsa.312800 Cucumis sativus Cucsa.312800 I 0.000
Eucgr.H01256 Eucalyptus grandis Eucgr.H01256 I 0.000
Eucgr.E00223 Eucalyptus grandis Eucgr.E00223 I 0.000
Thhalv10016740m.g Eutrema salsugineum Thhalv10016740m.g I 0.000
Thhalv10007879m.g Eutrema salsugineum Thhalv10007879m.g I 0.000
Thhalv10025733m.g Eutrema salsugineum Thhalv10025733m.g I 0.000
gene29546-v1.0-hybrid Fragaria vesca gene29546-v1.0-hybrid I 0.000
gene13716-v1.0-hybrid Fragaria vesca gene13716-v1.0-hybrid I 0.000
GLYMA08G34280 Glycine max GLYMA08G34280 I 0.000
GLYMA01G01740 Glycine max GLYMA01G01740 I 0.000
GLYMA09G34170 Glycine max GLYMA09G34170 I 0.000
GLYMA16G25600 Glycine max GLYMA16G25600 I 0.000
GLYMA16G15810 Glycine max GLYMA16G15810 I 0.000
GLYMA02G06550 Glycine max GLYMA02G06550 I 0.000
GLYMA01G38381 Glycine max GLYMA01G38381 I 0.000
Gorai.007G205700 Gossypium raimondii Gorai.007G205700 I 0.000
Gorai.004G181900 Gossypium raimondii Gorai.004G181900 I 0.000
Gorai.003G185700 Gossypium raimondii Gorai.003G185700 I 0.000
Gorai.008G068900 Gossypium raimondii Gorai.008G068900 I 0.000
MLOC_81641 Hordeum vulgare MLOC_81641 I 0.000
MLOC_6711 Hordeum vulgare MLOC_6711 I 0.000
MLOC_63066 Hordeum vulgare MLOC_63066 I 0.000
LPERR12G05920 Leersia perrieri LPERR12G05920 I 0.000
Lus10026033.g Linum usitatissimum Lus10026033.g I 0.000
Lus10014324.g Linum usitatissimum Lus10014324.g I 0.000
LjSGA_036158.1 Lotus japonicus LjSGA_036158.1 I 0.000
chr2.LjT41P23.50.nc Lotus japonicus chr2.LjT41P23.50.nc I 0.000
MDP0000185553 Malus domestica MDP0000185553 I 0.000
MDP0000286846 Malus domestica MDP0000286846 I 0.000
MDP0000231274 Malus domestica MDP0000231274 I 0.000
cassava11837.valid.m1 Manihot esculenta cassava11837.valid.m1 I 0.000
cassava37043.valid.m1 Manihot esculenta cassava37043.valid.m1 I 0.000
cassava45491.m1 Manihot esculenta cassava45491.m1 I 0.000
MTR_8g077950 Medicago truncatula MTR_8g077950 I 0.000
MTR_7g116890 Medicago truncatula MTR_7g116890 I 0.000
MTR_8g070820 Medicago truncatula MTR_8g070820 I 0.000
MTR_5g028850 Medicago truncatula MTR_5g028850 I 0.000
gw1.8.536.1 Micromonas pusilla gw1.8.536.1 I 0.000
estExt_fgenesh1_pg.C_10522 Micromonas pusilla estExt_fgenesh1_pg.C_10522 I 0.000
estExt_fgenesh2_pg.C_Chr_020452 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_020452 I 0.000
gw2.11.550.1 Micromonas sp RCC299 gw2.11.550.1 I 0.000
mgf000639m Mimulus guttatus mgf000639m I 0.000
mgf014804m Mimulus guttatus mgf014804m I 0.000
mgf008605m Mimulus guttatus mgf008605m I 0.000
mgf005151m Mimulus guttatus mgf005151m I 0.000
mgf008195m Mimulus guttatus mgf008195m I 0.000
mgf013375m Mimulus guttatus mgf013375m I 0.000
GSMUA_Achr4G18980_001 Musa acuminata GSMUA_Achr4G18980_001 I 0.000
GSMUA_Achr5G14150_001 Musa acuminata GSMUA_Achr5G14150_001 I 0.000
GSMUA_Achr4G04530_001 Musa acuminata GSMUA_Achr4G04530_001 I 0.000
GSMUA_Achr4G11610_001 Musa acuminata GSMUA_Achr4G11610_001 I 0.000
OBART12G06770 Oryza barthii OBART12G06770 I 0.000
OB02G12150 Oryza brachyantha OB02G12150 I 0.000
OB12G16310 Oryza brachyantha OB12G16310 I 0.000
ORGLA02G0021500 Oryza glaberrima ORGLA02G0021500 I 0.000
ORGLA12G0063500 Oryza glaberrima ORGLA12G0063500 I 0.000
OGLUM12G08090 Oryza glumaepatula OGLUM12G08090 I 0.000
BGIOSGA007448 Oryza indica BGIOSGA007448 I 0.000
BGIOSGA036419 Oryza indica BGIOSGA036419 I 0.000
OLONG_021967 Oryza longistaminata OLONG_021967 I 0.000
OMERI12G04560 Oryza meridionalis OMERI12G04560 I 0.000
ONIVA02G02170 Oryza nivara ONIVA02G02170 I 0.000
ONIVA12G06500 Oryza nivara ONIVA12G06500 I 0.000
OPUNC02G01690 Oryza punctata OPUNC02G01690 I 0.000
OPUNC12G06450 Oryza punctata OPUNC12G06450 I 0.000
ORUFI12G07600 Oryza rufipogon ORUFI12G07600 I 0.000
OS02G0128200 Oryza sativa OS02G0128200 I 0.000
Pavir.Ab00132 Panicum virgatum Pavir.Ab00132 I 0.000
Pavir.Ca00403 Panicum virgatum Pavir.Ca00403 I 0.000
Pavir.Cb01814 Panicum virgatum Pavir.Cb01814 I 0.000
Pavir.Aa03436 Panicum virgatum Pavir.Aa03436 I 0.000
PDK_20s1348391g002 Phoenix dactylifera PDK_20s1348391g002 I 0.000
PDK_20s1368181g001 Phoenix dactylifera PDK_20s1368181g001 I 0.000
PDK_20s1372692g002 Phoenix dactylifera PDK_20s1372692g002 I 0.000
PDK_20s1568831g001 Phoenix dactylifera PDK_20s1568831g001 I 0.000
PDK_20s1708971g001 Phoenix dactylifera PDK_20s1708971g001 I 0.000
PDK_20s1310372g001 Phoenix dactylifera PDK_20s1310372g001 I 0.000
gw1.3.298.1 Physcomitrella patens gw1.3.298.1 I 0.000
gw1.27.125.1 Physcomitrella patens gw1.27.125.1 I 0.000
POPTR_0007s12460 Populus trichocarpa POPTR_0007s12460 I 0.000
POPTR_0003s09630 Populus trichocarpa POPTR_0003s09630 I 0.000
POPTR_0001s01840 Populus trichocarpa POPTR_0001s01840 I 0.000
POPTR_0005s12750 Populus trichocarpa POPTR_0005s12750 I 0.000
Pm023132 Prunus mume Pm023132 I 0.000
Pm026586 Prunus mume Pm026586 I 0.000
PRUPE_ppa008024mg Prunus persica PRUPE_ppa008024mg I 0.000
PRUPE_ppa006484mg Prunus persica PRUPE_ppa006484mg I 0.000
29646.m001068 Ricinus communis 29646.m001068 I 0.000
30068.m002661 Ricinus communis 30068.m002661 I 0.000
SapurV1A.0051s0250 Salix purpurea SapurV1A.0051s0250 I 0.000
SapurV1A.0063s0130 Salix purpurea SapurV1A.0063s0130 I 0.000
SapurV1A.0817s0110 Salix purpurea SapurV1A.0817s0110 I 0.000
SapurV1A.0255s0070 Salix purpurea SapurV1A.0255s0070 I 0.000
SELMODRAFT_125734 Selaginella moellendorffii SELMODRAFT_125734 I 0.000
SELMODRAFT_129391 Selaginella moellendorffii SELMODRAFT_129391 I 0.000
SELMODRAFT_135978 Selaginella moellendorffii SELMODRAFT_135978 I 0.000
Si017637m.g Setaria italica Si017637m.g I 0.000
Si022325m.g Setaria italica Si022325m.g I 0.000
Solyc08g005290.2 Solanum lycopersicum Solyc08g005290.2 I 0.000
Solyc08g076100.2 Solanum lycopersicum Solyc08g076100.2 I 0.000
Solyc02g085610.2 Solanum lycopersicum Solyc02g085610.2 I 0.000
Solyc02g062950.2 Solanum lycopersicum Solyc02g062950.2 I 0.000
PGSC0003DMG400018469 Solanum tuberosum PGSC0003DMG400018469 I 0.000
PGSC0003DMG400012660 Solanum tuberosum PGSC0003DMG400012660 I 0.000
Sb04g002360 Sorghum bicolor Sb04g002360 I 0.000
Sb08g008300 Sorghum bicolor Sb08g008300 I 0.000
TCM_016606 Theobroma cacao TCM_016606 I 0.000
TCM_000436 Theobroma cacao TCM_000436 I 0.000
Traes_5AS_3A85F1C2C Triticum aestivum Traes_5AS_3A85F1C2C I 0.000
Traes_5BL_A5532B750 Triticum aestivum Traes_5BL_A5532B750 I 0.000
Traes_5DL_C794C1EEA Triticum aestivum Traes_5DL_C794C1EEA I 0.000
Traes_1DL_23D036A85 Triticum aestivum Traes_1DL_23D036A85 I 0.000
HBP1A_WHEAT Triticum aestivum HBP1A_WHEAT D 0.000
Traes_1BL_C5FEAF06E Triticum aestivum Traes_1BL_C5FEAF06E I 0.000
Traes_6BS_05264DAEA Triticum aestivum Traes_6BS_05264DAEA I 0.000
Traes_1AL_F18EC96DF Triticum aestivum Traes_1AL_F18EC96DF I 0.000
TRIUR3_18117 Triticum urartu TRIUR3_18117 I 0.000
TRIUR3_34165 Triticum urartu TRIUR3_34165 I 0.000
TRIUR3_18341 Triticum urartu TRIUR3_18341 I 0.000
GBF1 Vitis vinifera VIT_04s0023g01360 I 0.000
VIT_02s0012g02250 Vitis vinifera VIT_02s0012g02250 I 0.000
VIT_18s0001g12120 Vitis vinifera VIT_18s0001g12120 I 0.000
GRMZM2G019106 Zea mays GRMZM2G019106 I 0.000
GRMZM2G074373 Zea mays GRMZM2G074373 I 0.000
GRMZM2G153144 Zea mays GRMZM2G153144 I 0.000
GRMZM2G088140 Zea mays GRMZM2G088140 I 0.000